BAC Information

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BAC

Clone NameMSMg01-062K22
Chromosome16 (Build37)
Map Location 39,797,956 - 39,798,360
singlet/doubletsinglet
Overlap genenone
Upstream geneUpk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062K22.T7 (MSMg01no062_k22.b1)MSMg01-062K22.TJ (MSMg01no062_k22.g1)
ACCAG288599AG288600
length1,1951,196
length of high quality
(start - end)
405 (117 - 521)637 (128 - 764)
definitionCHROMAT_FILE: MSMg01no062_k22.b1 PHD_FILE: MSMg01no062_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:31 2005CHROMAT_FILE: MSMg01no062_k22.g1 PHD_FILE: MSMg01no062_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCNNNNNNACATTGGGCGCTAAGACTCCTATGGGAGAGGATCCGCG
GAATTCACACAAGTCTTCTTCCCCTTAGAAGACCTAGACAAAATTAATGG
CTCCTGAGAGACTGAGCATTAGATTTCCCCAGGGATAAGCCACCTGATAG
ATTATTCGGTCCTAAAAGATTAGCCCTAAATACATAGGAGCTTAATGAAC
TTATTGAGTTAAAATTGTAAGTATATTCATGTGTATGCAACAGTAATAAT
TGAGGAAGAAGAAGTCATGAATTTTAGAAAGAGTTAGGGAAGGATATGGG
GGAATTTAGGGAGGGACAATAATGCTACCCTTATATGTGAAATTCTCAGA
AAACAAATAAATAATTTTAGAAGAAACAATAATCAAAAGGAAACTATTTT
TTTTGTTTCCTGATGAACATGAACACAAAATTTCTTGAGAAGATCATTAT
ACACTGAATTCTGGAACATATTAAGAAGATCATATAATATGACAAGCCTG
TTATTGCAATAAAACATTCCAACCAAAAGCAACTTAAGGAAGAAAATATT
TATCTGGTTTACATATTCCAGGTCACAGACCATCACTGAGAGAGGTCAGA
GCAGGAAATTACTCACAGCAAAGATCCACAGCAGAAACCATATTTGCTTG
CTGCTTAGTGGCTTGTTCTGTGGACCTCTCATTGGCTCATGCTCAGCTAG
ATTTCCTAAATTGTGTCAATCTCACTACCTTGTTATCTCAGTCTTCATTC
TTGAACTCTATCTCTGGTAATTTTCTATATTAGATGTCCTTCTTCTTCTG
TGTATTTTTAATCTTTCCCTTCCTATTTTATATGTCTCTTGGACCATGTC
TCTTTGTTGTCTTTATTCAAGATGCTTTGTTTATTCTATATCTTCTTAAT
TACTGTGTGTATTGCTTTTTTTTTTTTATTTTTTTATGGTATTTATATTC
TATGTTATTTCTTTTATATATGCTCCTTATAATTTTTGGTCTCTTTTCTT
TGTTTTTTTTATATTTCTTTTCTCATAATATTCTTTTTTTTTCTTTTTCT
CTTTTTCTCTCTTATTGTTTCTTCTTCATTTCATTTTCCTTTTTTATTTT
CCTCTACATTTTGCTCTCCTTTCATTTTATATTCTCTATTCTTACTCCCC
TTCTTCTTTCTACTATTATTTTCTTTTATTCGTTCTTTTATTACA
CCAATCATTTNNNNAATCATGGNAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTATAACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGCCTTAATGCTCAACATCCCTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAATATTGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATAC
AATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAAC
ACTATGCCCCTCCTTAGAAGTGGGAGCAAAACACCCTTGGAAGGAGTTAC
AGAGACAAAGTTTGGAGTTGAGATAAAAGGATGGACCATGTAGACACTAC
CATATCCGGGGATTCATCCCATAATCCGCTTCCAAATGCTGAACACCATT
GCATACACTATCAAGATTTATGCTGAAAGGACCCTGAAAAATCTGTCTCT
TTGTCCAAATAAGCCTGGGCCTAACAAAATTTATAATTGTGATGCTTTCA
ATCTTTCTATTGGAAGGGATCCAATGGCCCCCCAATGTATTGAATTTATA
TAAAGTTTCTCAATTATTTTTTATTTCTTTTTGCCACCCCCTTATTTGTT
GGATTCCTCATTTTTTAATTTAATCTGTCCTCCCCCGCAAACTCTTTTGA
TATTATTCTGGCATAATGTCTTTTACAAAAAATTCTCTNTAATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_k22.b1 MSMg01no062_k22.b1 CHROMAT_FILE:
MSMg01no062_k22.b1 PHD_FILE: MSMg01no062_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:31 2005
         (405 letters)



>mm_chr16_39797808_39798612
          Length = 805

 Score =  683 bits (353), Expect = 0.0
 Identities = 392/411 (95%), Gaps = 12/411 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattagatttccccagggataagccacctgatagattattcggtcctaaaagattagccc 60
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cattagatttctctagggataagccacctgatagattattcggtcctaaaagattagccc 494

                                                                       
Query: 61  taaatacataggagcttaatgaacttattgagttaaaattgtaagtatattcatgtgtat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taaatacatagcagcttaatgaacttattgagttaaaattgtaagtatattcatgtgtat 434

                                                                       
Query: 121 gcaacagtaataattgaggaagaagaagtcatgaattttagaaagagttagggaaggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcaacagtaataattgaggaagaagaagtcatgaattttagaaagagttagggaaggata 374

                                                                       
Query: 181 tgggggaatttagggagggacaataatgctacccttatatgtgaaattctcagaaaacaa 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 373 tgggggaatttagggagggacaataatgcaacccttatatgtgaaattcacagaaaacaa 314

                                                                       
Query: 241 ataaataattttagaagaaacaataatcaaaaggaaactattttttt---t---gtttcc 294
           ||||||||||||||||||||||||||||||||||||||||      |   |   ||||||
Sbjct: 313 ataaataattttagaagaaacaataatcaaaaggaaacta------tagataaggtttcc 260

                                                                       
Query: 295 tgatgaacatgaacacaaaatttcttgagaagatcattatacactgaattctggaacata 354
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 259 tgatgaacatgaacacaaaatttcttgagaagataattatacactgaattcaggaacata 200

                                                              
Query: 355 ttaagaagatcatataatatgacaagcctgttattgcaataaaacattcca 405
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttaagaagatcatataatatgacaagcctgttattgcaataaaacattcca 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)