BAC Information

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BAC

Clone NameMSMg01-063C22
Chromosome16 (Build37)
Map Location 45,295,163 - 45,295,530
singlet/doubletsinglet
Overlap genenone
Upstream geneSidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla
Downstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063C22.T7 (MSMg01no063_c22.b1)MSMg01-063C22.TJ (MSMg01no063_c22.g1)
ACCAG288982AG288983
length1,413667
length of high quality
(start - end)
---368 (56 - 423)
definitionCHROMAT_FILE: MSMg01no063_c22.b1 PHD_FILE: MSMg01no063_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:27 2005CHROMAT_FILE: MSMg01no063_c22.g1 PHD_FILE: MSMg01no063_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCNNNNAAAANNNAAAAAAANNNNNNAANAAAAAAAAAACAAAAACA
AANAAANACAAANNAAACAAAAAAAANCNNTNCCACCCACCCTNNCCCCT
ATACTCATAATAAATTATTGACGCGCTCGCATAAATATTGTAGCTGCACG
TACTATGCGCCACGCAGGTATNCCTGTCGAGTATATTACCTCTTCTCTCT
CTACCCCCGCGCAACAACTACTGCCCATACTCGCACTATCGCTTCCGTGC
ACCATGACAATGATGGTCTTCTATCGCCCATCACTAGCACTGTTGCTATC
TTTTTCGTCTCTCTCCTTTCTCATCTACCATCACGAATCGTTACGCGCCT
CACAATTCACTATCCACATATGGTATATAGCATGACACAGTCATTAGTTT
ACCTGCAGTACAAATATACTTACNTCGCTATAGAATACTTCATGCACTCA
ATACAATCTAATGACAAATATGAAACTCACCTCCGTCAATAGACACTTAC
ATCAGCACATACAATTTCACGCCTCGACGCCTCTCGCCACTACGACATTA
ATAAAACTCAACTCATATCATCAAGCANAACACTTCTCTTCACTTCCCTC
GCATAAAATGTCAGCACACCTATCAATATATTAATCAAGTCAACCATCAC
TCTTCACTACCTTCCTCTAACACCTACTCAACTCGCTAACACACTACATC
TATTCGCATATAACTACTATACTATCTCGCCATGTCTTCTTCGCCGACTC
CAGCCATATATGCATCCATTTCAGTCTGCGCCTAATAGTCACTTCCGCCG
CGCTATACACAGTCCTCTCCTCTACTGGCGATTCAACCAATTACATTTAT
TAGGTAGTGCATCGTCGGCGCATATCGCCTGGATACCAAGATATAACAAT
ATATGACCTCTCACGACAATATGACACGCCTTCCTCATTTAATGATTATT
CACTAATACCAACCACACCGGACATATTCTATCCACAAGCTACTACTACT
CGACCACTTATCGATGTCCTCATCCAATTTTCACTTGTATTCCTATCTAC
GCCCACGTACCGCGCATCCCGCCACAACACACGAACATGTATNAACAATA
ATCACACATACCTAATCATCACACGGCTAACATAACACACACTGTATATA
TCCCACACTCAATCTTACTATGACCGTCTACATGCTAGCTTGATAAATAC
ACTACATATATCTGTGATCGTATATTATATGACGCAACTCAANACCACTT
ATCATCATACATTCGCCTCATAATCTCCACGACTTCGCTATTCTGATCAA
TATATATATATCCATCATCTCCCTTAACACGAAGCTCCATCTGTAATATC
ANATCCGTCTAGAACATATAACGCGAACGTAGTGCAATCTACTAACTACA
CGCCGCAACAAGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGTTTGGAGCCCCTCATTTGCTACATCACAGAAATACCCCAGAG
GAGCCAAATGAGATCATTTATGACAATATTCTTACATCTATCAATGTTTT
TTTTTTTTAAGAAAACTATTTTTTTCTTTTTTCTTTTTTTTTTTTTGCAC
CACCACACCCGGCTCTCTTCTCCTTTCTAATGTCCCTCCCAATCCTATCA
TCTCACAGGCATGCGCATGCCTCTTCTTCCCGGCCATGGTGACACACGCC
TTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGATTTCGAG
GTCAGCCTGGTCTACAAAATGAGTTCCAGGACAGCCAGGACTATACAGAG
AAACCCTGTCTCGAAAAACCAAAAAAAAAAGAAAAAAGAAAAAAAAACTA
TTTTTTGATAGGTATCTAAAGATGAGGAAAACTTGTTCACTACTCACTGA
TCCATATGTCTCTGAAAGAAGAAATGGATTTTTATCCTACTCCATTCAAT
AAGAAATGGCACACAAAGAATAACTTAAGCTTTGAGCTTTCTTCACAGAA
GGAGAAGTGTGTGTACACCATAGGGAAACATACCAGTGAATGTAGAATAG
AACTTACATTAGGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_c22.g1 MSMg01no063_c22.g1 CHROMAT_FILE:
MSMg01no063_c22.g1 PHD_FILE: MSMg01no063_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:27 2005
         (368 letters)



>mm_chr16_45294963_45295730
          Length = 768

 Score =  704 bits (364), Expect = 0.0
 Identities = 367/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtttggagcccctcatttgctacatcacagaaataccccagaggagccaaatgagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtttggagcccctcatttgctacatcacagaaataccccagaggagccaaatgagatc 260

                                                                       
Query: 61  atttatgacaatattcttacatctatcaatgttttttttttttaagaaaactattttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatgacaatattcttacatctatcaatgttttttttttttaagaaaactattttttt 320

                                                                       
Query: 121 cttttttctttttttttttttgcaccaccacacccggctctcttctcctttctaatgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttttctttttttttttttgcaccaccacacccggctctcttctcctttctaatgtcc 380

                                                                       
Query: 181 ctcccaatcctatcatctcacaggcatgcgcatgcctcttcttcccggccatggtgacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcccaatcctatcatctcacaggcatgcgcatgcctcttcttcccggccatggtgacac 440

                                                                       
Query: 241 acgcctttaatcccagcactcgggaggcagaggcaggtggatttctgatttcgaggtcag 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 acgcctttaatcccagcactcgggaggcagaggcaggtggatttctgagttcgaggtcag 500

                                                                       
Query: 301 cctggtctacaaaatgagttccaggacagccaggactatacagagaaaccctgtctcgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggtctacaaaatgagttccaggacagccaggactatacagagaaaccctgtctcgaa 560

                   
Query: 361 aaaccaaa 368
           ||||||||
Sbjct: 561 aaaccaaa 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)