Query= MSMg01no063_j16.b1 MSMg01no063_j16.b1 CHROMAT_FILE:
MSMg01no063_j16.b1 PHD_FILE: MSMg01no063_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:02 2005
(483 letters)
>mm_chr16_83753715_83754597
Length = 883
Score = 907 bits (469), Expect = 0.0
Identities = 481/485 (99%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 1 ttattttacctttga-ataaaagatgatttaaaatcattaaaagtgagtattctttccac 59
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttattttacctttgacataaaagatgatttaaaatcattaaaagtgagtattctttccac 258
Query: 60 a-ccatggtttctatggagccagttttattttatataatatagtttctttcacagtagta 118
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaccatggtttctatggagccagttttattttatataatatagtttctttcacagtagta 318
Query: 119 aacaataatgtcttgccctgaaagttcgtggggaaacaaatttaatttctttttattaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aacaataatgtcttgccctgaaagttcgtggggaaacaaatttaatttctttttattaga 378
Query: 179 atttttttttattttctttgtgagccacactctagtgttatgtatttgcctcacatagaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atttttttttattttctttgtgagccacactctagtgttatgtatttgcctcacatagaa 438
Query: 239 cattgtaaaaataagtgcattgtaaaaaataagcacatagccaaaactagatgcttacca 298
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 cattttaaaaataagtgcattgtaaaaaataagcacatagcaaaaactagatgcttacca 498
Query: 299 aaattcaatggccctaaacattgcccatataaaacagatttccagttatattcctgcttc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaattcaatggccctaaacattgcccatataaaacagatttccagttatattcctgcttc 558
Query: 359 gttatcagaggagatattttgctttatttatctatgttactgaaatagatcagaacaata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttatcagaggagatattttgctttatttatctatgttactgaaatagatcagaacaata 618
Query: 419 gccaaacattaaattgtcaacattaagatggcacttgtaagaagttgaaagtaatttaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gccaaacattaaattgtcaacattaagatggcacttgtaagaagttgaaagtaatttaaa 678
Query: 479 tttaa 483
|||||
Sbjct: 679 tttaa 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no063_j16.g1 MSMg01no063_j16.g1 CHROMAT_FILE:
MSMg01no063_j16.g1 PHD_FILE: MSMg01no063_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:02 2005
(578 letters)
>mm_chr16_83884901_83885879
Length = 979
Score = 806 bits (417), Expect = 0.0
Identities = 451/465 (96%), Gaps = 6/465 (1%)
Strand = Plus / Minus
Query: 1 tttac-acgatactgagggggcacattcttatgcattagttgttttcttaactaacttaa 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttacaacgatactgagggggcacattcttatgcattagttgttttcttaactaacttaa 401
Query: 60 aatcaccacgaagtgaaacagaagcaagtatggggtgttcataattatacaaatggttca 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 400 aatcaccacgaagtgaaacagaaacaagtatggggtgttcataattatacaaatggttca 341
Query: 120 ttaagttttctgttgacaacacaacatttgtgcctacatttctccttgatatgcttatat 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttaagttttctgttaacaacacaacatttgtgcctacatttctccttgatatgcttatat 281
Query: 180 ttctcattcacacttgtttgctttaatacgttagatgcaattctacctccacaatgaggt 239
|||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||
Sbjct: 280 ttctcattcacacttgtttgctttaataagttagatgcaattttatctccacaataaggt 221
Query: 240 tattaaaccaaggatacacgagccgggcatggtggcacatgcctttaatcccagcactcg 299
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 220 tattaaaccaaggatacacgagctgggcatggtggcgcatgcctttaatcccagcactcg 161
Query: 300 gcagatttctgagttcgaggccagcctggtctacaaaatgagttccaggacagtcagggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gcagatttctgagttcgaggccagcctggtctacaaaatgagttccaggacagtcagggc 101
Query: 360 tatacagagaaaccctttctcgaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 100 tatacagagaaaccctttctcga-----aaaacaaaacaaaacaaaacaaaacaaaacaa 46
Query: 420 aacaccccaaaacaacaaacaaacaaacaaaaaaccaaggatact 464
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 aacaccccaaaacaacaaacaaacaaacaaaaaaccaaggatact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
