BAC Information

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BAC

Clone NameMSMg01-064D10
Chromosome16 (Build37)
Map Location 79,921,116 - 79,921,422
singlet/doubletsinglet
Overlap geneEG383172
Upstream geneChodl, Prss7
Downstream gene1700066C05Rik, LOC621365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064D10.T7 (MSMg01no064_d10.b1)MSMg01-064D10.TJ (MSMg01no064_d10.g1)
ACCAG289751AG289752
length723834
length of high quality
(start - end)
311 (38 - 348)44 (181 - 224)
definitionCHROMAT_FILE: MSMg01no064_d10.b1 PHD_FILE: MSMg01no064_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:58 2005CHROMAT_FILE: MSMg01no064_d10.g1 PHD_FILE: MSMg01no064_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
CAATAAGAAATCTGCTGGTTTGAAGCAAGTTGAGCTAAGAAAAAGAAATG
AACTCTTTGTTAAATGGTTAAAGTCTGTATTGTTATGTGGCATTTATGGT
TGATCTGTGCTCAGGAGTAACAAGAACTGACCTATTTAGCTTAAAGAATA
TTCAGTTAAAGTAATGAAGACAGAACGTTTACACAGTATTGTCAAAAATA
ATCAATTTTATTCACTAAATGTATGTACATTAATTAAGATCAGAAGGTTA
TTTATCCTACATTCAGTGAAATGAGCAGTAATAAAATATAACTAAATATT
ATTTTACACCGCCCACGCACTACTAATGTAAGTAGATATACCATCTGTTC
TCAGGAAAAATAGTGGACTTACAGATCAGGAAAACCAATAAAAATAATTG
TTAGTTATTTGAGGGCATGCAGTTGTTAAGCTCTCATTGAGTACTTACAA
AAATGAACTGTATGAATTAAACTCAGTTCCCAATTATTAAGCAAATCATT
TGGTGTCATTAATTTATATTTTTTTCATCACTAACAAAAAAAAAAGACAC
ATATAAAGTTTGCAAGAACAATGGGCCTCTCTTTCTACTGATGGCCGACT
AGGCCACCTTCTGATTCATGTGCAGCTAGAGACACGAGCTCCGGGGTGTA
TTGGCTAGTTCATATTGTTGCTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAATTCGGGGAAGAAGGAAAAATTAATGGCCCC
CGGAAAAACAAACATTTCTTTCCCCTAAAAAAAAGGTTGAATTTGGCCAA
AAACCAAGGTTTCCGAAGGCAGGACCGGGAAGGCCTTGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGCCGGTCCCCTGGCGCGGGCAGGGCC
AACCTATCCTCGTCATCAATCACTTCGGAAACAACGAAACCACATCCCTT
CACCCAACATCCTCACAAATCTTTTTCTACGCAAACCTCACCTTCTAATC
CACCCTAAAAATTTTTTTTTTTCCCCCCCCCCCCCCCCCCTTTTCTTCAA
TATAAGTAATTTTAAATAATTACCCCCCCCCGCAAAAAAAAAAAAAAAAA
ACCCCGTCGGCGGGGGGTATCCACCTTCCCACAAAAAATCATCCCTGAAA
CAGCGCACACCTCACTCCTCCATCCACCTACCACATTACCTTTACCCCAC
CCCTCAATTCACTCCACCCCCCCTATACTATCCACCCGATACCTTGCCTC
TCATACGTTATTATCTCGTTCTCCCCCCTTTCCCCCTTTCCGCCCAAATT
CCCTGCCCACCAACCCATTTCCGCCTTTATCCGCCTTTTTCCCCTTCCCC
CTTCCCCTCCTCTTCTCCCGCCTTTCATTTCCCCCTACACTTACCTCCGC
CTTTATTTCCGCCTATATTCCTTACCCCTACCCCATACCCCCTACCAATT
CCCCTACCCGCTTACCATCCCTTTTAACCTAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_d10.b1 MSMg01no064_d10.b1 CHROMAT_FILE:
MSMg01no064_d10.b1 PHD_FILE: MSMg01no064_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:58 2005
         (311 letters)



>mm_chr16_79920912_79921622
          Length = 711

 Score =  586 bits (303), Expect = e-172
 Identities = 306/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccaataagaaatctgctggtttgaagcaagttgagctaagaaaaagaaatga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattccaccaataagaaatctgctggtttgaagcaagttgagctaagaaaaagaaatga 452

                                                                       
Query: 65  actctttgttaaatggttaaagtctgtattgttatgtggcatttatggttgatctgtgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actctttgttaaatggttaaagtctgtattgttatgtggcatttatggttgatctgtgct 392

                                                                       
Query: 125 caggagtaacaagaactgacctatttagcttaaagaatattcagttaaagtaatgaagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 caggagtaacaagaactgacctatttagcttaaagaatattcagttaaagtaatgaagac 332

                                                                       
Query: 185 agaacgtttacacagtattgtcaaaaataatcaattttattcactaaatgtatgtacatt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 331 agaacgtttacacagtattgtcaaaaataatcaattttattcactaaatgtatgtatatt 272

                                                                       
Query: 245 aattaagatcagaaggttatttatcctacattcagtgaaatgagcagtaataaaatataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aattaagatcagaaggttatttatcctacattcagtgaaatgagcagtaataaaatataa 212

                  
Query: 305 ctaaata 311
           |||||||
Sbjct: 211 ctaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)