BAC Information

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BAC

Clone NameMSMg01-064J07
Chromosome16 (Build37)
Map Location 75,068,549 - 75,068,951
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064J07.T7 (MSMg01no064_j07.b1)MSMg01-064J07.TJ (MSMg01no064_j07.g1)
ACCAG290012AG290013
length1,259729
length of high quality
(start - end)
427 (29 - 455)54 (631 - 684)
definitionCHROMAT_FILE: MSMg01no064_j07.b1 PHD_FILE: MSMg01no064_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:37 2005CHROMAT_FILE: MSMg01no064_j07.g1 PHD_FILE: MSMg01no064_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGGCACTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CATCTGAGGATGCATCTCATGATTTAGGCTATAGCATATTGCTCTAATAA
AATTCACACAAACCAAGTGATCTATATTGGCGCCCTCTGCCCTAGAAGAA
CGGAAATGAAAACAACCCATAAGAAGTATTTGAAGTATAATTCTTTCATT
TTTCTTTGCTTACATGACGATATGACTATCTCTATCTATAGCACAATGTT
CCCAGTTGAGAGCAATGCAGAGTGGTTCAGTAAGTGAGTGTCTGGCAACA
CATAGGTGCCCATCTGGATAAGTAGGTATGTCTGAGGAATGAGACTCTGA
TGAAATTCAATTTCTGCTTTACAACTTTCTGCATAGAAGAACAGAAGTTA
CCCTTAAAGACAGTTTAAACATTGCCATGTTTATCTCTGCTGTGTTACTC
TTTTTTTTTTCCCCCCCACCANTGAGCATTGCCGCCCTGCAAAAAAAAGA
GATGTAATCAGGACTTGGTTTAGGAACTACAGTTGGACTTTGAAGAACTG
CTGTGCTCAGCATTATAGTAGTAAACTTGTATAGAAAACCTTACTTTGTG
AGACAACTGAGGGCCTTGCAGAATCCAGAAGATACCAAGGAAGGGATAGT
TTTATGCATTCAGTGTAGGAAAATTAGACAACAGAGTCTGCTTCATGGCT
TCCCTGATACCCTCATTGTGTCCAATGACTGTGCATGGTTTATTCGCTAC
TTACCATTTTGATATTTCTTGAATTTGTAATTAGGCTGAATTTTTCTTCC
CAATTATTTTTCAGCTAACTCCTGTCTTTCCCCATAAAACATGTCAACGA
GTGATGCTATACATAGCTATTTACAACTAGAAACTTCTTAAACCTCCCAT
TTTTTAGTTTAAACTGAATTTGGTGGTTTACCCATTTTAAAAATTTTTTT
TTTCGAAAAATATGGATTTTGGTTAAAATTTAATTAATAAAAACCTACCA
AAAATTTTGGGATTATTTCCTTTTAAAATCGGCCGGCCCTAAATTCTCGG
TTTTCTGGCCAAAAAAAGGCTGGGCCTTTTGGGGATTTTATTAAGGCCCC
TTTAATTTAAGGTAAAAACCTTATTCCTCCCATAACTATATCCATGTGTG
CAAATAATAAATGCTCTTTCGCCCTTCCAAAACTTCTGTATACAAATACT
CTTTGTATTGCTTCTCTAGCAAATTTGGCGACAATAATTTTCTCATAAAA
ACCTCTTTA
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAAAATATCTAGGAATAAATTTC
AAATTCTTTTTTAGGTCTTCAAATTTTTTTTTTTTTTGCAGCCACTACCT
TTACAAGGATTGTTAGGGTATTATTTACTTAATAAATGATAATCTGAAAA
AACTTTTAAGGTATTAAAGCATTTTAAGGTCTCCTACATTTCCTTACTAT
TATATAGAAAGGGGAAGTACTATAATTACTATCTTATATGTATTAAAATT
TGAATACATTAAACTATGAAGTATGTACCTTCCACTAAAAAATTCTATCT
ATGCTGTTTTAAAAAACCCCCCCCCCATTGTTGAAGGGGCATAAAATGGC
ATGAAAAAGTAATATTACACATTTTGTTTCTAAGAATAATAAATAGTAGT
TATCACCTTGAGATTCGGAAAACTGTTAACTAACAAGGAAATAAAAGGTA
CTTTAAAATTTGCACTCATACATTTATTATGACTTTTCTAATATTTGAGG
AGGATTTTACTGATCCTTGCTAAATGTCATCATAAAACATTTCAAAGATA
TATGAGTTTTCATTATCACATAACCAGAGATTTTCTGAGTAAACACTTTT
TTTTTTGAAAAAAAATATTTGTTTGAAAATCTGTGCACAAACCTCAAAGG
CCTACCTCCCTTTATTTAATCAAGGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_j07.b1 MSMg01no064_j07.b1 CHROMAT_FILE:
MSMg01no064_j07.b1 PHD_FILE: MSMg01no064_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:37 2005
         (427 letters)



>mm_chr16_75068333_75069159
          Length = 827

 Score =  727 bits (376), Expect = 0.0
 Identities = 397/404 (98%), Gaps = 2/404 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaattcatctgaggatgcatctcatgatttaggctatagcatattgctctaataaaatt 76
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 ggaattcagctgaggatgcatctcatgatttaggccatagcatattgctctaataaaatt 560

                                                                       
Query: 77  cacacaaaccaagtgatctatattggcgccctctgccctagaagaacggaaatgaaaaca 136
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 559 cacacaaaccaagtgatctatattggcgctctctgccctagaagaacggaaatgaaaaca 500

                                                                       
Query: 137 acccataagaagtatttgaagtataattctttcatttttctttgcttacatgacgatatg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acccataagaagtatttgaagtataattctttcatttttctttgcttacatgacgatatg 440

                                                                       
Query: 197 actatctctatctatagcacaatgttcccagttgagagcaatgcagagtggttcagtaag 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actatctctatctatagcacaatgttcccagttgagagcaatgcagagtggttcagtaag 380

                                                                       
Query: 257 tgagtgtctggcaacacataggtgcccatctggataagtaggtatgtctgaggaatgaga 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgagtgtctggcaacacataggtgcccatctggataagtaggtatgtctgaggaatgaga 320

                                                                       
Query: 317 ctctgatgaaattcaatttctgctttacaactttctgca-tagaagaacagaagttaccc 375
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 319 ctctgatgaaattcaatttctgctttacaactttctg-agtagaagaacagaagttaccc 261

                                                       
Query: 376 ttaaagacagtttaaacattgccatgtttatctctgctgtgtta 419
             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaaagacagtttaaacattgccatgtttatctctgctgtgtta 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)