BAC Information

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BAC

Clone NameMSMg01-065G23
Chromosome16 (Build37)
Map Location 57,400,419 - 57,400,932
singlet/doubletsinglet
Overlap gene2610528E23Rik, 4631422O05Rik
Upstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065G23.T7 (MSMg01no065_g23.b1)MSMg01-065G23.TJ (MSMg01no065_g23.g1)
ACCAG290646AG290647
length680725
length of high quality
(start - end)
518 (44 - 561)169 (72 - 240)
definitionCHROMAT_FILE: MSMg01no065_g23.b1 PHD_FILE: MSMg01no065_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:56 2005CHROMAT_FILE: MSMg01no065_g23.g1 PHD_FILE: MSMg01no065_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAACTGGACCCCGGGTGGCTAACAGGCAGCTTCACATGTTTCTTGCT
TTAATCACCACTACCCACGACATTACCAAAACATTTATTTAGTCTGTTTT
TAATCTCACCACATGGCAAATGACTGCCCACATAAACAAAACACTTTAGT
GCTCTATGAATTCTTTGCGACTGAGACCCCTGGAGGGAAAGAAATGTGTA
ATGGCTACCTGAAGCACACTGAGTTTTCTACAAGTGAGTGATTGACTCTC
ATTCAAAAAGGGAGAAGGAGAAGTAAAATTCTCCAAAAGAGCAGTGGAAG
GGCATTTTGGGTATTATACACACACCACAGAAAATCAAGGGAGCCCTGCC
AGCTCCTAACTAATTACGAGAAGCACGAGATAGAAGTCAGCTGTGGAGAC
ATAGGCAAGGGAAAGAGACAAGGATTTCTTTGAGAGGAAAAGCCATGTAA
GCTCCCCACACTGTGCATGGTGGAGGTTGTAGTATGCCTTAGAATCATCC
AGAGGACTTCTGAGTAGTGGTTTTCAAGCTATAGGGGCAAAACGTCAGCA
GTTTACTAGAACACTGATGGTTAGCTCGTCCCCATTCAAGAGATTTGGAT
TCAGCAGGGAATGGATGTGCCTATAAAATC
ACTGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTAGCTCAGGTTCACTAGCTCAAAAGAG
CTTCCTGAGGGCTGGGATTATAGGTGTGAGCCATACACCTGGATTACAGT
GTTCTTCTGATGTAGTCTTTCTGGCTGGGCTGAATACAGTTTGGGGTTTT
GTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGGTGGNTCAAGTATATAT
TTCTTTCCTTCTTTTTTTATTCTTCCGTTTTTTTTTTTTTCTCTTCTTTT
TCCCTACCCCAATTTTTTTTTTATTCATTTATTTTCAATTTCTCTTCCAT
CCCCACTTTTTTCATTTTTCATTCTCCTATTTATCCATTCTTTATTTTTT
CTTTATTTTTTAATTTTTTCCCCCACCTTTTTTTTTAATTACCCTTTTTT
TCTTATTTTTTTCTTTTTTTCTTCTTCTTTTTCCTTTACTTCTTCTATTT
TTTATTATCCTTTTTTTATTTTCACTTTTTTTATATTTTAATCTTTTTTT
TTTTTGTTTACTATTTTAATCATTTCTCTTATCTTTTTTACTTTTTCTAT
GTCATTTTTTTCTTTTTTTTATCTATTTCATTTTTTCCTTTTTTATATCA
ACAAACACATTTTCTTATTTTATTTTTATTTGTCTTTCCTTCCTCTTTCT
TTCTCCTTATTTTTTTTTTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_g23.b1 MSMg01no065_g23.b1 CHROMAT_FILE:
MSMg01no065_g23.b1 PHD_FILE: MSMg01no065_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:56 2005
         (518 letters)



>mm_chr16_57400215_57401132
          Length = 918

 Score =  978 bits (506), Expect = 0.0
 Identities = 512/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaactggaccccgggtggctaacaggcagcttcacatgtttcttgctttaatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaactggaccccgggtggctaacaggcagcttcacatgtttcttgctttaatca 264

                                                                       
Query: 65  ccactacccacgacattaccaaaacatttatttagtctgtttttaatctcaccacatggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccactacccacgacattaccaaaacatttatttagtctgtttttaatctcaccacatggc 324

                                                                       
Query: 125 aaatgactgcccacataaacaaaacactttagtgctctatgaattctttgcgactgagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatgactgcccacataaacaaaacactttagtgctctatgaattctttgcgactgagac 384

                                                                       
Query: 185 ccctggagggaaagaaatgtgtaatggctacctgaagcacactgagttttctacaagtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctggagggaaagaaatgtgtaatggctacctgaagcacactgagttttctacaagtga 444

                                                                       
Query: 245 gtgattgactctcattcaaaaagggagaaggagaagtaaaattctccaaaagagcagtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgattgactctcattcaaaaagggagaaggagaagtaaaattctccaaaagagcagtgg 504

                                                                       
Query: 305 aagggcattttgggtattatacacacaccacagaaaatcaagggagccctgccagctcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagggcattttgggtattatacacacaccacagaaaatcaagggagccctgccagctcct 564

                                                                       
Query: 365 aactaattacgagaagcacgagatagaagtcagctgtggagacataggcaagggaaagag 424
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactaactatgagaagcacgagatagaagtcagctgtggagacataggcaagggaaagag 624

                                                                       
Query: 425 acaaggatttctttgagaggaaaagccatgtaagctccccacactgtgcatggtggaggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acaaggatttctttgagaggaaaagccatgtaagctccccacactgtgcatggtggaggt 684

                                             
Query: 485 tgtagtatgccttagaatcatccagaggacttct 518
           ||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtagtatgccttagaatcatccagaggacttct 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)