BAC Information

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BAC

Clone NameMSMg01-065L17
Chromosome16 (Build37)
Map Location 8,220,775 - 8,221,198
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065L17.T7 (MSMg01no065_l17.b1)MSMg01-065L17.TJ (MSMg01no065_l17.g1)
ACCAG290871AG290872
length676670
length of high quality
(start - end)
95 (137 - 231)424 (104 - 527)
definitionCHROMAT_FILE: MSMg01no065_l17.b1 PHD_FILE: MSMg01no065_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:19 2005CHROMAT_FILE: MSMg01no065_l17.g1 PHD_FILE: MSMg01no065_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACACTCCTATATTCAGAAATCCGCGGAATTCCGTGCTCTG
CTTTCCACAATGTGATTCCAGGCTCTGTCTATTGACCCTTGCCTGCCTTT
CTGGCGGAAAAAGGACAGGAAATACATGCACAGATCTCTTTCTCCCTTTC
TGCTCCCTTCTTTCCCTCCCTTTCTTCCTTACACCTTTCTTCTGACTTCT
TTCCCCTGCGGCTTCCCTACTTTCCTCCATCCATCACAATAAGCCCAATA
TATCTTCTGTCTGATCTCTCCACTATAGACCTTGATCAAAGGATTCAAAG
ACAAGTGATCCCCACGCAATTGACCAGGAGACATCAGTGAAGAAACAGAA
AACCTATAATAGTCAAGGATAAGAAAGAGCCTAGGGGAGCTGCAAGACAT
AGTCCAACCTCACCCTAGTTTCATTGCTGCCTCTGGACCACACACACTGT
TCCCGGCTTTTCACACCTTGATTGCAAGACACTGTACTTTTGGACTCACT
CACTAGTCACTGACAGAGTCTCCTGTAGTCAGGATTGAAACTCCTAGACA
TGTGTGCCTTTTATAATGTACTCTTGAAGAACATCAGTGCTTGCTCACAT
CTATTTGACAGTGCAAAAATTTAAAGACCTTCCCCATTTCCCAACCTGCT
GCTCTTGAACTCATATTGAAGCCTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGTGGGATGATTTCTTATCTGTTACCTTGTCAGAAACGGACACG
AGAACAATCAAATGCTCATTTTTCCGCATCTGGTGTTCTGCGGAGAACAG
CATTTACACCCCTACTGTGTTTAACTGTATAAATGGTCTCTATCGATCAT
CTAAATCAGAACCACTTCTGTGCAGAGCAAACCATATCAGATAGAGACCC
ACATACGTTTGGTGCTGGGGAGGGGGCAGTCTACTTTATCCCTGTACCTC
TCTTCTGCCAAGAAAGGGGAGAAAGCTGATTAGTCTCACTGCAGCATTTC
TGACTTTGCTGTTGTGTGGTTGAAGCCTCCCTTTTAATCAAGGCACTGCC
CCACGTATGTGCCTGTGTTTGCTTAATTACCTGCATCTGTACATGACTAT
AGTCTACACCTTTCGTGCCTCGCTTCTGTGTTCCATATTTGGCATCTGTC
AGTCATCCACACATGCCCTTATGCAGTCATTTAATGCTTTATTTTTTTTC
ATTGTCTTTTTAATAACTTTGTGTCTCCTGTGATGGCTTGTGGTATCTGC
CTGTGCCGCCTTTGTTCTCTATGATGCTGTTCAATTACTTGCAGATTTTG
TGTATTTGCTTCTTATTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_l17.g1 MSMg01no065_l17.g1 CHROMAT_FILE:
MSMg01no065_l17.g1 PHD_FILE: MSMg01no065_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:19 2005
         (424 letters)



>mm_chr16_8220575_8221398
          Length = 824

 Score =  729 bits (377), Expect = 0.0
 Identities = 412/429 (96%), Gaps = 10/429 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaatcaaatgctcatttttccgcatctggtgttctgcggagaacagcatttacacccct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 624 acaatcaaatgctcatttttccgcatctggtgttctgcggggaacagcatttagacccct 565

                                                                       
Query: 61  actgtgtttaactgtataaatggtctctatcgatcatctaaatcagaaccacttctgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actgtgtttaactgtataaatggtctctatcgatcatctaaatcagaaccacttctgtgc 505

                                                                       
Query: 121 agagcaaaccatatcagatagagacccacatacgtttggtgctggggagggggcagtcta 180
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 504 agagcaaaccatatcagatagagacccacatacggttggtgctggggagggggcggtcta 445

                                                                       
Query: 181 ctttatccctgtacctctcttctgccaagaaaggggagaaagctgattagtctcactgca 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 444 ctttatccctgtacctctcttctgccaagaaaggggagaaagctgagtagtctcactgca 385

                                                                       
Query: 241 gcatttctgactttgctgttgtgtggttgaagcctcccttttaatcaaggcact-----g 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 384 gcatttctgactttgctgttgtgtggttgaagcctcccttttaatcaaggcactgtgtgg 325

                                                                       
Query: 296 ccccacgtatgtgcctgtgtttgcttaattacctgcatctgtacatgactatagtctaca 355
                ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 324 -----cgtatgtgcctgtgtttgcttaagtacctgcatctgtacatgactgtagtctaca 270

                                                                       
Query: 356 cctttcgtgcctcgcttctgtgttccatatttggcatctgtcagtcatccacacatgccc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cctttcgtgcctcgcttctgtgttccatatttggcatctgtcagtcatccacacatgccc 210

                    
Query: 416 ttatgcagt 424
           |||||||||
Sbjct: 209 ttatgcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)