BAC Information

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BAC

Clone NameMSMg01-065N11
Chromosome16 (Build37)
Map Location 72,540,066 - 72,540,408
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065N11.T7 (MSMg01no065_n11.b1)MSMg01-065N11.TJ (MSMg01no065_n11.g1)
ACCAG290955AG290956
length649857
length of high quality
(start - end)
339 (54 - 392)99 (139 - 237)
definitionCHROMAT_FILE: MSMg01no065_n11.b1 PHD_FILE: MSMg01no065_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:27 2005CHROMAT_FILE: MSMg01no065_n11.g1 PHD_FILE: MSMg01no065_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTTCAGAGAGGATCCGCGGAATTCTTATAATTCTAAAAGTCTGAAGA
GAATGCCCAATGTTTAATTTTATTGACCACAGGGAAGATTGTTGCAAATG
GTGCTTGAAGATGAAGGAGTGGAGTATACTGTAGACTATGACAGGAAGTG
GCACAAAGACTAAAGGACAAGCCTTACAAGTGTGAATTTGGACTCCTCAA
ACCATGTAAATGCCTTGTAGGTAAGGCAACTCGCCTGTAAATCTAGTTAG
GCCTCTGATGCCATCAAATTTTGCCTTTTCTTATATGTTGTTGGTTCCTT
GAGGATTTCACACAATTTTGATTATATTCATTCTTCTCACCTAGACCCAC
ACTTCCTTTCTTTCTCATCCAGCTCTCTGTGTGTGTGACACAGAGAGAGG
GTGGGGGTGAAGGTCATACTACTTAATGCGTAATCTTCCAATATAAAGTG
CTCAATCTAATCTATATAAACTCTCATATAAAATAACTCCCCATCTCACA
ACACCTATATTTTGGTACTATCTTCTAATCTATGTTCAATTTTAGTTTCA
ATTCTCCTTCCTAAGCAGTTTTTACGCCAACCATAAGTTAGCCCATTATA
ACCTCGAATGTACTATTTTTTCATATTTTTCCTATTTTTTCTCCCACTT
TGTTATGGTTTAGTAAAGTTAATTTTTTTAGGGGGGGTNNNTNNTTTTTT
TNNCTTTTTTTTTTTCTATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTAATCCTTG
AAATCCTTATTGCTGAGACACTGTGAATATTCTGCCTAATTGAATATCAC
CTACAGAGTTAGGATTTAAGTGGTGGGGGGGGGGATGTTTTCTTTCTCTT
TAACTCCAATCCTCTCATAAATTTCTTTTTCTTTTTTTCCTCTTTTTTTC
TCTTCCCTTCCTTCCTCTCTTTCTTTTTTTTTACTTTCTTTTGTTTTTTT
AACTCTGCTCCTCCAATTCGATCCTCATCTTTTTTTTTCTTCTCTCCTCC
ATCTCTCAACCTTCTCTCGCCTTACCTTTTTCTTTTTGTTCCTCATCCTT
TTTTTATCTTTTATTTGGTCTTTCTTTCCTCTTTCTTTACTTTTGTTTTA
TTCCCCCTCTTCTTTTTTATTTTTTTTTTTCCCACCACTTTTTCTTCCTT
TGTTTTTATTATTTATTCTCTTTCCTATTTATATTACCTACGTTGACCTT
TTTACCTTTTTTTTTCCTTTACCTTTCTTTTACCGTGTTAACCCTTCGCT
CTTTTATACTGCCTTTTCCCATATCTATTTTCTCTTATACCTTTCTATAT
TCTTCATATTAGCTAAGGCACTTTTCTATTATTTCATCGGTTTCCATCGA
TTATTCTTTCTAACCCCACTCATTTCTATTTGCTTACTTTCATTCTTCTT
TCTTTACTTCACTGTACTCTCCTACTTATTTTCCTATCTACTCATTTTCT
ATCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_n11.b1 MSMg01no065_n11.b1 CHROMAT_FILE:
MSMg01no065_n11.b1 PHD_FILE: MSMg01no065_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:27 2005
         (339 letters)



>mm_chr16_72539874_72540612
          Length = 739

 Score =  590 bits (305), Expect = e-173
 Identities = 330/343 (96%), Gaps = 8/343 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccaatgtttaattttattgaccacagggaagattgttgcaaatggtgcttgaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 193 tgcccaatgtttaattttattgaccacagggaagattgttgcaaatggtgcttgaagata 252

                                                                       
Query: 61  aaggagtggagtatactgtagactatgacaggaagtggcacaaagactaaaggacaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aaggagtggagtatactgtagactatgacaggaagtggcacaaagactaaaggacaagcc 312

                                                                       
Query: 121 ttacaagtgtgaa--------tttggactcctcaaaccatgtaaatgccttgtaggtaag 172
           |||||||||||||        |||||||||||||||||||||||||||||||| ||||||
Sbjct: 313 ttacaagtgtgaagactagaatttggactcctcaaaccatgtaaatgccttgtgggtaag 372

                                                                       
Query: 173 gcaactcgcctgtaaatctagttaggcctctgatgccatcaaattttgccttttcttata 232
           ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct: 373 gcaactcgcctgtaaatctagttagccctctgatgccatcagattttgccttttctcata 432

                                                                       
Query: 233 tgttgttggttccttgaggatttcacacaattttgattatattcattcttctcacctaga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttgttggttccttgaggatttcacacaattttgattatattcattcttctcacctaga 492

                                                      
Query: 293 cccacacttcctttctttctcatccagctctctgtgtgtgtga 335
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cccacacttcctttctttctcatccagctctctgtgtgtgtga 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)