BAC Information

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BAC

Clone NameMSMg01-065O05
Chromosome16 (Build37)
Map Location 4,514,438 - 4,514,774
singlet/doubletsinglet
Overlap geneSrl
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneTcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065O05.T7 (MSMg01no065_o05.b1)MSMg01-065O05.TJ (MSMg01no065_o05.g1)
ACCAG290991AG290992
length680679
length of high quality
(start - end)
340 (71 - 410)337 (70 - 406)
definitionCHROMAT_FILE: MSMg01no065_o05.b1 PHD_FILE: MSMg01no065_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:31 2005CHROMAT_FILE: MSMg01no065_o05.g1 PHD_FILE: MSMg01no065_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXXX
XXXTTTCCTGCCTCTGGCTATATAAATATGGCTGCTATGAACATAGTGGA
GCATGTGTCCTTATTACATGTTGGAGCATCTTTTGGGTATATGCCAGGAG
TGGTATAGCTAGGTCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAACT
GCCAGACTGATTTCCAGAGTGGTTGTACCAGCTTGCAAACCCACCAACAA
TGGAGGAGTGTTTCTCATTCTCCATGTCCTCTCCAGCTTCTGCTGTCACC
TGAGGTTTTGACATTCTGACTGGTGCGAGATAGAATCTCAGGGTTGTTTT
GATTTGCATTTCCCTGATGACTGAGGAAGTTGAACATTTCTTTAGGTGCT
TCTCAGCCATTCACCATTCCTCAGTTGTTAAGCTCTGTTCCCTATTTTTT
AATAGGATTATTTGGTTCTCTGGATTCTAACTTCTTGATTTCTTTGAATA
TTTTGGATATTAACCCTCTATCATATGTAGGATTGGTAAAGATCTTTTCC
CAAACTGTTGGTTGTCGTTTTGTCTTATTGACAGAGTCCTTTGTCCTACC
CCAGCTTTGCTATTTTATTGAGGCTCTCGCTTGCCTATTGTTCATTTTAA
AATATTAATCTCTTTTTTTTCCGCTTATGA
ATAAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGGGAAGTTGAATGAGTCCAAGGAGTAGG
GGTATTTTACCCCCAAGGAGGGAGAGCTGAGGCAGATGTGGAGTCTCTAA
GTTCTTACAGACCCTTCTTGGGACCTCCAAGTTCAGGCAGAGTCACATGG
TACAGGCAGAAATGGACTGACTGTGCTTTGCCCCAGAGCTGACCTTCTAT
TTGGAGAGATGACTTGCACTGTAAAAAAATGTTACTAACACCCCCTGCAG
CCTGCACTCTGGTTGTAGTTCAGAAGAGAGTTAGGAAGGTCGGCTTCACA
GAGGGAGCCGGCCACACTTGTAGGAGGAGAAAATCATCAGATCATCTGCT
TCTGGAGGCCAAGAGACTGCGCTTTTATCATTTCTCTTATAGATGTAGAA
ATAATTAGACTTTTAAAAAATTCCTGGTTTGTTTTTATTTCTGACAATTC
TACCATGGCCCATAAAGATTAAACGGTATACCCCAGAAACAAGTAACTTA
CAAATTTTAAATAACTTTTTTTGGAACAGCATCCTCTTATATGGCCCTGG
CCTGCCTGTCCTGGAACTCACTATGTTTAGAGTCGTCTGTTCCTCCGCTC
CCCCAAATTCCCTGGTTTTTTGTCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_o05.g1 MSMg01no065_o05.g1 CHROMAT_FILE:
MSMg01no065_o05.g1 PHD_FILE: MSMg01no065_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:31 2005
         (337 letters)



>mm_chr16_4514238_4514974
          Length = 737

 Score =  621 bits (321), Expect = 0.0
 Identities = 333/337 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgggaagttgaatgagtccaaggagtaggggtattttacccccaaggagggagagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctgggaagttgaatgagtccaaggagtaggggtattttacccccaaggagggagagctg 478

                                                                       
Query: 61  aggcagatgtggagtctctaagttcttacagacccttcttgggacctccaagttcaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggcagatgtggagtctctaagttcttacagacccttcttgggacctccaagttcaggca 418

                                                                       
Query: 121 gagtcacatggtacaggcagaaatggactgactgtgctttgccccagagctgaccttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gagtcacatggtacaggcagaaatggactgactgtgctttgccccagagctgaccttcta 358

                                                                       
Query: 181 tttggagagatgacttgcactgtaaaaaaatgttactaacaccccctgcagcctgcactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 357 tttggagagatgacttgcactgtaaaaaaatgttactaacaccccctgcaggctgcactc 298

                                                                       
Query: 241 tggttgtagttcagaagagagttaggaaggtcggcttcacagagggagccggccacactt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tggttggagttcagaagagagttaggaaggtcggcttcacagagggagccggccacactt 238

                                                
Query: 301 gtaggaggagaaaatcatcagatcatctgcttctgga 337
           ||||| |||||||||||||||||||||| ||||||||
Sbjct: 237 gtagggggagaaaatcatcagatcatctacttctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)