BAC Information

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BAC

Clone NameMSMg01-065P17
Chromosome16 (Build37)
Map Location 50,578,634 - 50,724,286
singlet/doubletdoublet
Overlap geneCcdc54, LOC672778
Upstream geneIft57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414
Downstream gene5330426P16Rik, EG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065P17.T7 (MSMg01no065_p17.b1)MSMg01-065P17.TJ (MSMg01no065_p17.g1)
ACCAG291063AG291064
length671660
length of high quality
(start - end)
244 (63 - 306)463 (56 - 518)
definitionCHROMAT_FILE: MSMg01no065_p17.b1 PHD_FILE: MSMg01no065_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:38 2005CHROMAT_FILE: MSMg01no065_p17.g1 PHD_FILE: MSMg01no065_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,578,634 - 50,578,877)(50,723,824 - 50,724,286)
sequence
TGCGGCGCTAATACGACTCCTATTTCATATGAATCCGCGGAATTCCATTT
TTCCCTGAAATGAGCTGGTTTTAATAGAAAGGAGAGAATGAGTGTACCTT
GTGCTTTGCCTCACGCAGATGAGTCACAGTGACGTGAATCTTGACAATTT
TTGTTCAATCTTCCTTAGTCTGCTTAGTCATGCACATCCCCGAAGTTATC
AGTATATTGAAATTAATTTTACCAATGTGAAGATTCAAAACTCCATTTTT
TGTTTGTTTTAGAGGACATAGGGGAACTAAGCAAGCTCTTATCTCAGATT
TAGTAATTTTTTCAAATCTGAAATTTTTTATATTATTTGACAGTGGCTTT
TTTCCTTTTTTCTTTCCTTGCACTTCATTGTTGTAGATGACAGAGTTGTA
ATCAGTGTTTCTATAAAACATGCTTATTCATTTTCAGTGAACTATAAAAC
AGATGAAAAGGCTCTTCTCTGCTTCCTGAGAAAAATTTGAAAGTTAATTT
GTCTGTAGCCACAAAGGGACCAAAATATTAGAACAAATAAAAAGAAGAAA
ATTAGATTAAGACTGCTTTTGGTATCTTTTCTCAGTGTGGACAATTCTTT
CTTCCATTGAGAGGCGATGAGAAAAAAAATCCGATAAGTAAAATCATGTA
CGGCTCAGGCTATATTCTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGTCAAGTTTAAGGTCGGCTAATAAGTCAAAGTTTTCCAGTGGA
GACATCCCCTACTTCCCAAGAATACGTCTGTGTTAACACACCTGCTTTGC
TGTTACTGTTCTTGTGGAATGAACCTGAAGGAAATGTAGCCATGGCAGGA
AAGTGACAGTGGCTTCAGAGCAGCAGCAAGAGCCTCGTAAACTCTCCCCA
AGGAGAAGGTCCAAGGGGTACAGTTTCACTCCAGTTCGGTCTTCTGCCCA
TCCGCTACTTGGTGAAGACTTGGTGTGACTGCCAGAAAGATGGTTAGGTG
CCAAAAATCAACTCAGAGCCTAGGCTAGCCAATTCTAGCAGTAATTGAAT
ATCCTCCTTTCTCAGTGAATAGTCACCCTCATAAATTGGCTAAAAGTCCA
TTGGGGGAAGAACGAGAGAGTCATCACAATATGTGCATGTAATTATATAA
CAGGGTCTTTATTGGTTAAGGCTGAGCCACTTTTCCCATCTCTGTAGTCC
TTACAATTTTCTTCATGTCTGGCAACCGGAGCAAGAAATTGTAAAGATTC
ATCGGGGACAGTACCATTAACATCTTGCTTTTCAGTTCCTGCCTTAATTA
GTTATAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_p17.b1 MSMg01no065_p17.b1 CHROMAT_FILE:
MSMg01no065_p17.b1 PHD_FILE: MSMg01no065_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:38 2005
         (244 letters)



>mm_chr16_50578434_50579077
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctggttttaatagaaaggagagaatgagtgtaccttgtgctttgcctcacgcagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctggttttaatagaaaggagagaatgagtgtaccttgtgctttgcctcacgcagatga 260

                                                                       
Query: 61  gtcacagtgacgtgaatcttgacaatttttgttcaatcttccttagtctgcttagtcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacagtgacgtgaatcttgacaatttttgttcaatcttccttagtctgcttagtcatg 320

                                                                       
Query: 121 cacatccccgaagttatcagtatattgaaattaattttaccaatgtgaagattcaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatccccgaagttatcagtatattgaaattaattttaccaatgtgaagattcaaaact 380

                                                                       
Query: 181 ccattttttgtttgttttagaggacataggggaactaagcaagctcttatctcagattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccattttttgtttgttttagaggacataggggaactaagcaagctcttatctcagattta 440

               
Query: 241 gtaa 244
           ||||
Sbjct: 441 gtaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no065_p17.g1 MSMg01no065_p17.g1 CHROMAT_FILE:
MSMg01no065_p17.g1 PHD_FILE: MSMg01no065_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:38 2005
         (463 letters)



>mm_chr16_50723785_50724647
          Length = 863

 Score =  857 bits (443), Expect = 0.0
 Identities = 458/463 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcaagtttaaggtcggctaataagtcaaagttttccagtggagacatcccctacttc 60
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cagtcaagtttaaggttggctgataagtcaaagttttccagtggagacatcccctacttc 443

                                                                       
Query: 61  ccaagaatacgtctgtgttaacacacctgctttgctgttactgttcttgtggaatgaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccaagaatacgtctgtgttaacacacctgctttgctgttactgttcttgtggaatgaacc 383

                                                                       
Query: 121 tgaaggaaatgtagccatggcaggaaagtgacagtggcttcagagcagcagcaagagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 382 tgaaggaaatgtagccatggcaggaaagtgacagtggcttcagagcagcagcaagggcca 323

                                                                       
Query: 181 cgtaaactctccccaaggagaaggtccaaggggtacagtttcactccagttcggtcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cgtaaactctccccaaggagaaggtccaaggggtacagtttcactccagttcggtcttct 263

                                                                       
Query: 241 gcccatccgctacttggtgaagacttggtgtgactgccagaaagatggttaggtgccaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcccatccgctacttggtgaagacttggtgtgactgccagaaagatggttaggtgccaaa 203

                                                                       
Query: 301 aatcaactcagagcctaggctagccaattctagcagtaattgaatatcctcctttctcag 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 202 aatcaactcagagcctaggctagccaattctagcaggaattgaatatcctcctttctcag 143

                                                                       
Query: 361 tgaatagtcaccctcataaattggctaaaagtccattgggggaagaacgagagagtcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tgaatagtcaccctcataaattggctaaaagtccattgggggaagaacgagagagtcatc 83

                                                      
Query: 421 acaatatgtgcatgtaattatataacagggtctttattggtta 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  acaatatgtgcatgtaattatataacagggtctttattggtta 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)