BAC Information

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BAC

Clone NameMSMg01-066A07
Chromosome16 (Build37)
Map Location 4,502,882 - 4,503,060
singlet/doubletsinglet
Overlap geneSrl
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneTcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066A07.T7 (MSMg01no066_a07.b1)MSMg01-066A07.TJ (MSMg01no066_a07.g1)
ACCAG291091AG291092
length7751,780
length of high quality
(start - end)
181 (44 - 224)---
definitionCHROMAT_FILE: MSMg01no066_a07.b1 PHD_FILE: MSMg01no066_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:41 2005CHROMAT_FILE: MSMg01no066_a07.g1 PHD_FILE: MSMg01no066_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGAAT
TCTTAGCCCACCTACCTCTTCTCCCTTTGAAAAAAATCAAAGACTTCAAC
ACACTTGCTTTTTACCTATAAAGTACACAGAACTGACATAATAATTTTGT
TTTCCACCTCATACCTAGGTCCTATGAATATCTGGTTGGAGAGATATACA
GAGAAATTGCTATAAATCCTCTAACCATTGGGTGATATGTAGGGCTTGTG
GTAAATGCTAGGGGGATTCTTAAAGATAATGAAGTTGGTTTAATTTTCGT
ATGATGTGTGATTATTTGTATTGTTTTGGGTCAGAATATGATTGGGGATG
GGTGTTAGAGAAAGGGGGGGAGGGGGAGGGTTGAGAGAGGAAGGAATAAA
GGAGGTAGGTGTGGGAGGGTAGTCAGAGGGGGGAGAGAGGGTAGAGGGAG
GGCGAAGGGGGGAAGAGGGGACTCAAAGAAAATAAAAAAACAAAGAAAAA
AAAAAAATGAAAAATAAATAATAGAAAAAAAGAAAGAAGCTTCTATGTAA
TGAAATTAATTATTATTATATAAAAATATATTACTCAAAAATTTTAAATG
TTATAAATTTATTGTAGATATTTCCAATGTGTAGTTAGTTCCGCAAATAT
TATTAAATAATATAAATATTATTATTATACGTTTTCATCTAAGATCTAAC
ATATAAACTACTAATGCAATGTGAGAACATTAAAAATAATGAGGAAGGAA
AGAAAAGGAAAAAAATAAAAGGAAA
ACACACAACACGAGCAACAGCACACGAAAAGCAACNAACNANACNAGGAA
AAGAACAGGCAGTACAAACACAGACGAAGAGATACAGACAGAGAGACNCA
ACAACAACAGACAGGAGCAGCGAAGAGAGAGCAAGCAGACAAGATCGAGA
CNAACGNCGNTCGNGNAGACAGCCAACAGCGCGAGAGCGGCGNCGCCNNC
NCGCACGAAGCAGAGCACGCACCGAAGCATCACGACGCAGTAGAAGCGGA
CGCGACCGCGCGCAGAAGCGCGCAGCGCGCGCGCGANCGGCGGCCGCCGC
CGCGCGCGTGCGCCAGCGTCAGNAGACGCGGAGACGAGGACGACGACACA
TGAGTCGGCACGGCAAATCGCGACTACAANCAGGCGCGGCAGCNANGAGG
ATGCATCGAGCACGCATGACGACGACAGAGAGCGCACGACGGATGAANAG
NCCGACACTACGCAAAGACGGATGCACATACGATANTGNAACGTGACGCT
AGAACACGAAAGGATAGCAACGAACGACGACGACGCAACAACAAGAGACG
AGAATAGAATAAACACGAGATGACGAGAGTACAAAGAGAAANAGCAGTAC
AATAGTAGACATCAACACAANAAACGTACGAGTAGACNATACGCATAACC
AGACAAGATACACATAATAAGAGACGATATAGAAGNTANANAGTAAACNA
GCACATGNCACGTAAGCGACGAGGAAGACATAGGACGATCGACAGAGNAA
CNTAACAGAGAGGAGNCAGGAGAGTCATCGACGCGTCAGACGAGCGCGAC
GCAGCGCGCCGTCGCGACGCGCGCGACAGNAGCAGACGGCGACGCGNACG
CACGACGGCACACGCAGCGACGAACGCGACGAGCATATGANCGNATGCGA
CNGCGANGNCGAGATGAGAGCGACANCTGACGAGAGATACGACCGATGAG
CGTGCACACTATCAAATACACTAGATTGAGATANTANNANAATNTAGCGN
NTATNNNNNNANCNCTCAACATCATATNNTNNTACCTCATTATNTANNTA
TCACCATAATAATGTATACATAAAAGNTGGTTGCGTCATAGAGGAGGATA
CCTATGCCGCACTAGGGAGNNAAAAAAGAAAAACANGAGGGNNNNNNNNC
TGNCGNNTTTGCCCGTGANTACTNNGAGNGAAAAAAANNAGANNNNGNGN
GNGNGNNNNNNNGNNNNNNGNNGGGNNNGNGNNGGNGNNGNTGTTTTTTT
TTTCTCTCTCTCTCGCGACAAAAANNAAAAGATACAATACTNATGGNNGN
NGNNNGAGGGGNANGNCNANGANGGTGTNTTTATAAAGTNANAGGGNNGA
TCGGGCANATACGATCTCAAAAGAAGAAGGATCATAGATCNACGTGACCT
ACTTAGTACGTTCATCTAATAATCAGTGANTAGTATACATAGATGAGCTA
TCGCTACTGTNCGGTTATCATCGTGTATAGATGAGTATACAAATACTCCA
TAACATCACTAAAGNGATAGACTAATCAGCTCTATACTATTATAGAACCT
AGTCACAGCNGANTACTATATATATCATCAGAGACGCGTCNGCTGCGCCC
TTGCTCAGCATCAGTAGATCGTATATACNCACTACAGACGAGACATTAGN
TGCGTNCTACATACATAGATACTAAACTAGTANGNGTCGTGTGCTCNTCC
GTCNTACATAAAAATATATACAATAGTAGATGTATATATACGCNANCACA
TACATATNATGTAGCAGAAATAATATTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_a07.b1 MSMg01no066_a07.b1 CHROMAT_FILE:
MSMg01no066_a07.b1 PHD_FILE: MSMg01no066_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:41 2005
         (181 letters)



>mm_chr16_4502680_4503260
          Length = 581

 Score =  315 bits (163), Expect = 8e-91
 Identities = 175/179 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcttagcccacctacctcttctccctttgaaaaaaatcaaagacttcaacacact 62
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 203 ggaattcttagcccacctacatcttctccctttgaaaaagatcaaagacttcaacacact 262

                                                                       
Query: 63  tgctttttacctataaagtacacagaactgacataataattttgttttccacctcatacc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgctttttacctataaagtacacagaactgacataataattttgttttccacctcatacc 322

                                                                      
Query: 123 taggtcctatgaatatctggttggagagatatacagagaaattgctataaatcctctaa 181
           ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagttcctatgaatatctggtttgagagatatacagagaaattgctataaatcctctaa 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)