BAC Information

Click to search

BAC

Clone NameMSMg01-066H02
Chromosome16 (Build37)
Map Location 55,140,543 - 55,140,913
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066H02.T7 (MSMg01no066_h02.b1)MSMg01-066H02.TJ (MSMg01no066_h02.g1)
ACCAG291414AG291415
length677760
length of high quality
(start - end)
375 (55 - 429)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no066_h02.b1 PHD_FILE: MSMg01no066_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:14 2005CHROMAT_FILE: MSMg01no066_h02.g1 PHD_FILE: MSMg01no066_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTATGCTGTCCTTTAGCTCATTGGTTATTGCTGGTGTTGGGTGGAT
GATCCTGTGCTAGCAGGACACCTTGGAATGCAGACAGAGCCTGATAATGA
ATCTCAGGGTCCAGGATGCTGCTTACGTGTACCAGCTGTGTCCCTGGTAG
ACCAGTTGGGCAAGTAATTGGCTGGATTGGTGTCTGAGCTGGATACTTTG
GGCCCCAAAGGCTTCTCAGGAAGTCAGGGTGTTCCCAGGGCCAGACAATT
GAGGTCAGGGGACCATGTTCACAAAACTCACCTTTGATAGGTATGCCCAA
CAAGGACAGACTGGCAATGGATCGGTGGGGGAGTGATCAGAGAATTTTCC
TTTTTTCATTCACTTTTTCTGTTGAATCATCACCACTTGTCTAGGATAAA
GCCTCTTTGATTATGATGGATGATTCTGTCTATGTGCTCTTGGATTCTGT
TTACAAGGATTTTATCATTTTTTCAAATCACGTTCACACTGTAAATTTTC
TATCAGGTCCCTTCCTTTTTCTTTATTGGTTCCTCATCCATGTTTCTCCA
TCTTATTTTTCCGCCTTTTCCTAACTATTATTTTGTTTATGTTTCTTCCC
CTCCTTCTTTTGTGCCCCCATTCCCCA
CCCCCCCCCCCCCNCCCCCCCCCNCCCCCCCCCCCCNCCNCCCCCCCACA
ACAAGCCCATCTATATTTGCGGCGCTAAACGACTACTATTTTCAGAAGAC
CGCGGAATTCTTTCCTGTATCCTACTGAATGGCTGAGAAGCACCTGAAAA
ATGTTCAAAATCCTTAATCATCTGGGAAATGCAAATCAAAACTACCCTGA
GAGTCCACCTCACACCAGTCAGAATGACTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTTTTG
GTGGCATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCC
TCAAAAAATTGGACATAGCACTACCTTTAGTGTCCTGCTACACCTCTCCT
AGGCATATATCCAGACGATGTCTCCATTGGCAACAAAGACACATGCTCCA
CTATGTTCATAGCAGCCCTATTTATAATACCCATATATTGGAAAGATCCC
AGATGCTGTTGAGCGAATAGATACCGAACATGTGCCACATTTTCCCATTG
TTTTACCACTCACCCCTTTATCAATAATGTTCTTATGAATTTCCCATTTA
CACGTATGTACTTGTCAGATTATTATTTTGTTAGCTGACATTCCAATCAC
AAAAAAACTCTCCCGAAAAGCAAATCTTTGAAATAGGCAAAATATTTACA
CTTAACCTTAAACCACTCCCATATATAATATACAATTTTACCAAAAACAT
GTACTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_h02.b1 MSMg01no066_h02.b1 CHROMAT_FILE:
MSMg01no066_h02.b1 PHD_FILE: MSMg01no066_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:14 2005
         (375 letters)



>mm_chr16_55140339_55141113
          Length = 775

 Score =  687 bits (355), Expect = 0.0
 Identities = 367/371 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gctgtcctttagctcattggttattgctggtgttgggtggatgatcctgtgctagcagga 64
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 575 gctgtcctttagctcgttggttgttgctggtgttgggtggatgatcctgtgctagcagga 516

                                                                       
Query: 65  caccttggaatgcagacagagcctgataatgaatctcagggtccaggatgctgcttacgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caccttggaatgcagacagagcctgataatgaatctcagggtccaggatgctgcttacgt 456

                                                                       
Query: 125 gtaccagctgtgtccctggtagaccagttgggcaagtaattggctggattggtgtctgag 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtaccagctgtgtccctggtggaccagttgggcaagtaattggctggattggtgtctgag 396

                                                                       
Query: 185 ctggatactttgggccccaaaggcttctcaggaagtcagggtgttcccagggccagacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctggatactttgggccccaaaggcttctcaggaagtcagggtgttcccagggccagacaa 336

                                                                       
Query: 245 ttgaggtcaggggaccatgttcacaaaactcacctttgataggtatgcccaacaaggaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttgaggtcaggggaccatgttcacaaaactcacctttgataggtatgcccaacaaggaca 276

                                                                       
Query: 305 gactggcaatggatcggtgggggagtgatcagagaattttccttttttcattcacttttt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 275 gactggcaatggatcggtgggggagtgatcagagaattttccttttttcattcactcttt 216

                      
Query: 365 ctgttgaatca 375
           |||||||||||
Sbjct: 215 ctgttgaatca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)