BAC Information

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BAC

Clone NameMSMg01-068C11
Chromosome16 (Build37)
Map Location 33,322,430 - 33,322,712
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4
Downstream geneZfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068C11.T7 (MSMg01no068_c11.b1)MSMg01-068C11.TJ (MSMg01no068_c11.g1)
ACCAG292714AG292715
length691687
length of high quality
(start - end)
84 (5 - 88)283 (50 - 332)
definitionCHROMAT_FILE: MSMg01no068_c11.b1 PHD_FILE: MSMg01no068_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:29 2005CHROMAT_FILE: MSMg01no068_c11.g1 PHD_FILE: MSMg01no068_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGATCCGCGGAATTCTTGTCATTAGGCACCTCACTGCACCACAGCTAC
ACATTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCACGGCTGTCC
TGGAACTCACTCTGTAGACCAGGCTGGCCTCTAACTCATAAATCTGCCTG
CCTCTGCGTCCCAAGTGCTGGTATTAAAGGCATGCGACACCACGGACCAG
AGTAAAACTTTAAAGGAATGGAACTTGGAGCATCTTCTCCCAGGTACCTG
GGATCTTCGGGCTTTGCTTTTCTCTGTGTGCTTGTTTGGGGCCTTCATGG
TTCCGCCCGATAATATTAATTTTTTTTTTCCCCCCCCCCTCCCCCACTCA
GAATTTTATTTTACAACCCTTTGCCCCCTCGAAAAAAAAAAAACAAGAAA
CTTGTTATGGGCCGTATATGCTCGGTTCTATTATTGGTTCTATTGCACTG
TAGTTTTTTGTCTGATTCATGCGTCTCTCCTGATCGTATTATTTTTCTTT
TCTCTCCCTTTGTACCTTTTTTATCCTTATTTCCCTTCTGAGAAGAAGCC
CCCCCTTTTTTATTCTCTCTATTCTTTTTCTTTCTTGCTATATTACCCAA
TTTTTATTATTCAATCTACGATATATTCTGATACCTCTTTTCTTATTTCC
CCCCCCTCTCTTTACTCTGTTAATCATCCCTTCTATACCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA
AGAACTGACAATGATGTTTTCAGTTTCTGTGCTAAGAAGAGTGTGTGTTG
ATAAGGAGCCATGTGGCCAGAGTGGCCAGAAAGCCTAATCTGAAAAAGTG
ACATCAACTTTGAGATCAGGAAATCAAGAGTCAGGCTAAGTCAGGTGAAA
GGATGGGGAAGAGGGAACATCACATTCAAAGGCCCGGCCATGGCACCCCA
AGATCAAAGCAGCTTCGTGGACGCTCACAAAAGACTTCTCCTCTGAGTTC
TAGAAGGGCTAAACTATTTTTACCCCTGATGTAATTTTATTTCTCTCCCC
CCTCCCCGCCTGTTGGATTGGAGCCCATCGCATTCCGCACAGAGACCATC
AAAAAAACAGTTCATCCGCTCAGGCAAGGCCAGTGGACAAGCAAAGGTCG
CTGTCAGTGAGGCGCAGCTTCTGTTTAGGAGACGCCATTTCATGTTGCGT
GAGGCTTAGGGGACCGGGATCATAGCTGGCTTTCTCCTTTCCGACTTGCC
CACTCATTGTCACCACCTAGCGCACCTAATACAAATATGCCTGAATTATC
TGACTCGATGTTCTCGAGACCCTACACAATCCCCTTTTTGGCGAATGTCC
CGTTATTTTGGCTCTGGCCCCTCCTGCCTGTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_c11.g1 MSMg01no068_c11.g1 CHROMAT_FILE:
MSMg01no068_c11.g1 PHD_FILE: MSMg01no068_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:29 2005
         (283 letters)



>mm_chr16_33322230_33322912
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 278/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaactgacaatgatgttttcagtttctgtgctaagaagagtgtgtgttgataaggagc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 483 aagaactgacaatgatgttttcagtttctgtgctaagaagagtatgtgttgataaggagc 424

                                                                       
Query: 61  catgtggccagagtggccagaaagcctaatctgaaaaagtgacatcaactttgagatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 catgtggccagagtggccagaaagcctaatctgaaaaagtgacatcaactttgagatcag 364

                                                                       
Query: 121 gaaatcaagagtcaggctaagtcaggtgaaaggatggggaagagggaacatcacattcaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 363 gaaatcaagagtcaggctaagtcaggtgaaaggatggggaagagggaacatcacgttcaa 304

                                                                       
Query: 181 aggcccggccatggcaccccaagatcaaagcagcttcgtggacgctcacaaaagacttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggcccggccatggcaccccaagatcaaagcagcttcgtggacgctcacaaaagacttct 244

                                                      
Query: 241 cctctgagttctagaagggctaaactatttttacccctgatgt 283
           ||||||||  |||||||||||||||||||||||||| ||||||
Sbjct: 243 cctctgagggctagaagggctaaactatttttacccgtgatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)