BAC Information

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BAC

Clone NameMSMg01-068D14
Chromosome16 (Build37)
Map Location 77,975,102 - 77,975,387
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp25, 2810055G20Rik
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068D14.T7 (MSMg01no068_d14.b1)MSMg01-068D14.TJ (MSMg01no068_d14.g1)
ACCAG292768AG292769
length737722
length of high quality
(start - end)
324 (42 - 365)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no068_d14.b1 PHD_FILE: MSMg01no068_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:35 2005CHROMAT_FILE: MSMg01no068_d14.g1 PHD_FILE: MSMg01no068_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCATGTGGTCTTTGTTCTCTGGGTCTGGATTATTTCAGCTAATATATCG
TCCAGATTTATCCATGTTCTCACAGATGCCAAAAACAAACAAACAAGCAA
ACAAAAGGCTTGTTACGATTGAATAATATTCCATTGTATATACATGATTC
CCTTTTAATCTGTTCATTCATTGATGGAAACCTAGATGTTTACCATATCT
TGGTTATTTTAAATTACCTGTCAATTAACAAGGAGTACTTTTGGCATACT
GATTTTAAGTCTCCGGAAGAGAGATTTCTGGATCATATGATAATTCCATT
ATTACCATCTGATTTTTTATTTGCCCCACCCCCTCCCCAATGCCTCTATT
AAATCAGCATTGCACCAGGCTTCCATCTGCATAAAAACCAAGCTAACACC
TGTGAGCCTTTGTAACATAGCAGAATGAATATCACTAAAGTGATATTATC
ATCATAATGTCAAGCTTTGTTTTTCTAACCATAACTAATGGATGAACATC
TATATCATCTTTAATTGATTTAACTGTCTTGTTATGCTTGATATATCTAC
TTATATTTTACTTGTCCACCTTTTTACATTTCCTTTATATGCGTTTATAA
ATAATTTTGATCCTCCCTTATTTTTTATCTTATTACTTTTATTATTTTAA
CTTTTTTCTTTTTTATTTTCTGTCCTCTTACTTCTTA
TCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCGAATAACTAACTACCTTTTAAAGTTCTATTTA
AGTTATTGATTCTGTGAAATTTTTACTCATTAATTTAACCTTTAATATAA
AAATTACATTAAACTAGGAAAATGAAACATTTGTATTTATAGTTACCTTG
TGATATTCTCTGAGTACAATACTAATTAATCTCCATTACTGCTGTGTCAA
GGGCACAAAAGTGACACTTGTAGCCACTAAAAAATAGTGGTAAAGACTCA
GGCTGAACTTTAGAGAATTTGCCTTTGTTCTTTTGATTAGCTCATTCTAC
ATAATATTGGAGTTTTTTTTTTACCCCCCCCCCGCCACCAAGACTATTTT
TCATAATTTATCTGAAGCTCTACTCTAAATGAATAAATCTATTTTTTTCT
GGAAACTCTACCTTTGCAATAATTTAGACTTAAATAATGTAGTTGATAAT
TTAATGGCAATTGTATTTTTAATTTCTAAAGGATTGTATTTTTATTTTTT
ATATCTCAAGCAGTCTCTTTATTTAGTCAGCACTTTCTTGATTTATCTGA
TTTAATCAGTAGCTTCCATTTGTATTGATATTCTTACTTTTACTTAACGA
CTTTTATTTATTTTTGTTCAATTTATACCCGATTATACCGTAATAACCAT
ACCACTCTGCTTCCTTTTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_d14.g1 MSMg01no068_d14.g1 CHROMAT_FILE:
MSMg01no068_d14.g1 PHD_FILE: MSMg01no068_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:35 2005
         (286 letters)



>mm_chr16_77974902_77975587
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaccttttaaagttctatttaagttattgattctgtgaaatttttactcattaattt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 486 aactaccttttaaagttccatttaagttattgattctgtgaaatttttattcattaattt 427

                                                                       
Query: 61  aacctttaatataaaaattacattaaactaggaaaatgaaacatttgtatttatagttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aacctttaatataaaaattacattaaactaggaaaatgaaacatttgtatttatagttac 367

                                                                       
Query: 121 cttgtgatattctctgagtacaatactaattaatctccattactgctgtgtcaagggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttgtgatattctctgagtacaatactaattaatctccattactgctgtgtcaagggcac 307

                                                                       
Query: 181 aaaagtgacacttgtagccactaaaaaatagtggtaaagactcaggctgaactttagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaagtgacacttgtagccactaaaaaatagtggtaaagactcaggctgaactttagaga 247

                                                         
Query: 241 atttgcctttgttcttttgattagctcattctacataatattggag 286
           |||||||  || ||||||||||||| ||||||||||||||||||||
Sbjct: 246 atttgccaatggtcttttgattagcccattctacataatattggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)