BAC Information

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BAC

Clone NameMSMg01-068F14
Chromosome16 (Build37)
Map Location 41,298,927 - 41,299,218
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp, Gap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068F14.T7 (MSMg01no068_f14.b1)MSMg01-068F14.TJ (MSMg01no068_f14.g1)
ACCAG292864AG292865
length714720
length of high quality
(start - end)
295 (71 - 365)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no068_f14.b1 PHD_FILE: MSMg01no068_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:45 2005CHROMAT_FILE: MSMg01no068_f14.g1 PHD_FILE: MSMg01no068_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCATGAGAAGAACGCTAAGGCCTTGACTTGCAGCAGTCATTGTGCAA
GGTGAGTTGGGAAAAATGCAAACTACCGGCAGTTCATGGAAAACTAAGTT
GTTTGTAGTTATACTTAATGTGGAAACAGATTAGTGATAGAAATGTAGCC
TTCATTTGAGGAGAGCAAATTTCTAATATATTCACCTTAGTAGCTAGATT
ACATGTGGATTCTTATGTTTAGCATTAGCTGAATATGCTATTTTAAAAGA
ACTATTGAAAAGCAATTGATAATAATATGGCAAAACCAACTGCACCCCAG
GAAGTTAAGGTTTTTTTTTATCACCCCCCACCTCCTGGGTTACAAGCACC
TACTGTCATTTTGGCAAATTTTGGGAAATACAACATGTTCTCCGTAGGGT
CCACATTACAGGGTCAAACTTAAGGAAATATTTTCGACATTAGAGGCAGC
GGAAAGATGAGTGATTTAAGAAAACCCATTATTCTTGAATATGGCCTAGG
GCCCATTCCCAATACCCAAACTATTTCACGTTACTCCCAAATATCACACC
CAGGGAACTGGTTCTTTTCTGATTTCTTGATAGAACCTGGCAGTCTGTAA
GGAATATATACATGTAAGCTATTCACTCATATGATTAAAATAAATAATTA
TTCCTATGTCTTCC
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGTGTCTTTCTGCGCCTCACGTATCAGAGTAATAGT
GGCTTCATAAAATGAGCTGGGTAGAGTACCTTCTACTTCTATTTTGTGAA
ATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAAC
TCTGCACTAAACCCATCTGGTCCTGGTCTTTTTTTTGGTTGTTAGACTAT
TAATAACTGCTTCTATTTCTTTAGGTGATATGTGACTGTTTATATGGTCA
ACTTGATCCTGATTCCACTTTGGTAACTGTTATCTGATCCGAAATTTGTC
CTTTTACTCCAGTTTTTCCAGTTTTGCTGTATATAACCCTTTTGCAAAAG
GATCTTATGTTGTTTTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_f14.b1 MSMg01no068_f14.b1 CHROMAT_FILE:
MSMg01no068_f14.b1 PHD_FILE: MSMg01no068_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:45 2005
         (295 letters)



>mm_chr16_41298727_41299421
          Length = 695

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggccttgacttgcagcagtcattgtgcaaggtgagttgggaaaaatgcaaactaccggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 201 aggccttgacttgcagcagtcattgtgcaaggtgagttgggaaaaatgcaaactagtggc 260

                                                                       
Query: 61  agttcatggaaaactaagttgtttgtagttatacttaatgtggaaacagattagtgatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcatggaaaactaagttgtttgtagttatacttaatgtggaaacagattagtgatag 320

                                                                       
Query: 121 aaatgtagccttcatttgaggagagcaaatttctaatatattcaccttagtagctagatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgtagccttcatttgaggagagcaaatttctaatatattcaccttagtagctagatt 380

                                                                       
Query: 181 acatgtggattcttatgtttagcattagctgaatatgctattttaaaagaactattgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgtggattcttatgtttagcattagctgaatatgctattttaaaagaactattgaaa 440

                                                               
Query: 241 agcaattgataataatatggcaaaaccaactgcaccccaggaagttaaggtt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaattgataataatatggcaaaaccaactgcaccccaggaagttaaggtt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)