BAC Information

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BAC

Clone NameMSMg01-068F21
Chromosome16 (Build37)
Map Location 81,951,468 - 81,951,925
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068F21.T7 (MSMg01no068_f21.b1)MSMg01-068F21.TJ (MSMg01no068_f21.g1)
ACCAG292878AG292879
length716724
length of high quality
(start - end)
623 (34 - 656)574 (64 - 637)
definitionCHROMAT_FILE: MSMg01no068_f21.b1 PHD_FILE: MSMg01no068_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:47 2005CHROMAT_FILE: MSMg01no068_f21.g1 PHD_FILE: MSMg01no068_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATAGGGTGCGGATCCGCGGAATTCCTCAGTTG
ATAATTCTCTCTTTATTTCTGTATCTGGTTTTTAATTGGTTTATTTAGTT
TCCTGGAATCTAACTTCTTCAGCTCTTTGTATATGTTGGATATTAGACAT
CTATCAGATGTAGGGTTAGAAAAGTTATTTTCCACATCTGTAGGTTACTG
TTTTGTCTTGTGGACAGTGTCCTTTGCTTTTCTGCGTTATGAGGTTCCGT
TGGTTAACTGTTGATCTTAGATCCTGAGCCATTGGTGCTCTGTTAAGGAA
CCTTTTCCCTGAGTGAATGTGTTCAAGGCTATTTCCCATTTTCTCTTCTA
TTGGATTTAGTATATCTTGTTTTATGTGGAAATCCTTGAGCCTCTTAGAT
TTGAGCTTTGTACAAGGAGATGAATATGGGTCAATTTGCATTCTACCAGT
TAGACTAGCACCATTTGATGAAGATGCTTTCTTTCTCCCTCTGGTTTTGG
CTTCTTTGTCAAAGATCAAGTCTCCTTAGGTTTATGGGATTATTTTGGTA
CTTCAGTTCTACTCCACCGATCAACATGTCTGTCTCTGCACTAATACCAT
GCAGTTTTGTTTTTGTTTGTTTGTTTGTTTTGTTTTTGTTTTTGTTTTGT
TTTGCTTTGTTGTTTTTCACATTCTTAGTCATCAGGAAAATGGAAATGAC
CCTGAGATTTCACATN
TACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACTTCCATCTCTACATCTTATACTTCATCTTAGTTA
AATTATTGGATACACACACACACACACACACACACACACACACACACACA
CACACATGCACACACACACACACAAACACACACATACACACACACATGCA
TACACACACACACACATATGATCTTTAAAATTATTGCACAATAGTAATTA
TCGAAATTTAAAAGAGTTCGTTTTTTTCCTATGTAATATACAATCTCATT
ATAATGGGATTTTTCATTGCATACTTCAATTCAAAAGGCTACTTTATCTA
TTTCAGTGACAGTATTGGTCATTATTGACATTATTTTGAATTTCATCTTA
TAATATGCTTATATCTAAAAAATATAAAAATTAGCTGAGTTCAAACTGGT
CATCCTTTGCATATTTGCAGGTTCTTACATACAGTGTTTAAATGAATCAA
GACTTCCTCTAAGACTGTTTACTCAACTGACTGAGGAGTGGGTGGAGATT
TTGTAAATTTCCTATTGGCTGACAATCAATACAAGATTATAAACAGTAAT
GTAATTTGAGGCTCACGTCATGCTAAATTGTTTGCTTGGTTGAGTATTGA
CCATGTTAATAGCATAACTGTAGCTCCTTCCATAATTTTCCATTACTTTT
GGTATTCAGTTACAAATGTCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_f21.g1 MSMg01no068_f21.g1 CHROMAT_FILE:
MSMg01no068_f21.g1 PHD_FILE: MSMg01no068_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:47 2005
         (574 letters)



>mm_chr16_81951115_81952086
          Length = 972

 Score =  750 bits (388), Expect = 0.0
 Identities = 443/462 (95%), Gaps = 4/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 113 acacacacatacacacacacatgcatacacacacacacacatatgatctttaaaattatt 172
           ||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||
Sbjct: 811 acacacacacacacacacaca--cacacacacacacacacatatgatctttaaaattatt 754

                                                                       
Query: 173 gcacaatagtaattatcgaaatttaaaagagttcgtttttttcctatgtaatatacaatc 232
           |||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||||
Sbjct: 753 gcacaatagtaattattgaaa-ttcaaagagttcgtttttttcctatgtaatacacaatc 695

                                                                       
Query: 233 tcattataatgggatttttcattgcatacttcaattcaaaaggctactttatctatttca 292
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tcattataatgggacttttcattgcatacttcaattcaaaaggctactttatctatttca 635

                                                                       
Query: 293 gtgacagtattggtcattattgacattattttgaatttcatcttataatatgcttatatc 352
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 634 gtgacagtattggtcattgttgacattattttgaatttcattttataatatgcttatata 575

                                                                       
Query: 353 taaaaaatataaaaattagctgagttcaaactggtcatcctttgcatatttgcaggttct 412
           | | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 574 t-acaaatataaaaattagctgaattcaaactggtcatcctttgcatatttgcaggttct 516

                                                                       
Query: 413 tacatacagtgtttaaatgaatcaagacttcctctaagactgtttactcaactgactgag 472
           ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct: 515 tacatacagtgtttaaatgaatcaagacttcctttgagactgtttactcaactgaccgag 456

                                                                       
Query: 473 gagtgggtggagattttgtaaatttcctattggctgacaatcaatacaagattataaaca 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gagtgggtggagattttgtaaatttcctattggctgacaatcaatacaagattataaaca 396

                                                     
Query: 533 gtaatgtaatttgaggctcacgtcatgctaaattgtttgctt 574
           |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 395 gtaatgtaatttgaggctcacgtcatgctaaattgtctgctt 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 972
Length adjustment: 10
Effective length of query: 564
Effective length of database: 962
Effective search space:   542568
Effective search space used:   542568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)