BAC Information

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BAC

Clone NameMSMg01-069A19
Chromosome16 (Build37)
Map Location 35,217,351 - 35,378,951
singlet/doubletdoublet
Overlap geneAdcy5, Sec22a
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb
Downstream genePdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069A19.T7 (MSMg01no069_a19.b1)MSMg01-069A19.TJ (MSMg01no069_a19.g1)
ACCAG293400AG293401
length682750
length of high quality
(start - end)
251 (105 - 355)131 (121 - 251)
definitionCHROMAT_FILE: MSMg01no069_a19.b1 PHD_FILE: MSMg01no069_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:41 2005CHROMAT_FILE: MSMg01no069_a19.g1 PHD_FILE: MSMg01no069_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,378,714 - 35,378,951)(35,217,351 - 35,217,481)
sequence
TCGACTCCTATAGGTCGAGGATCCGCGGAATTCTAGCCACTATGCCTCAA
GATCGCCCACCAAGATCCAGGCCAGAAACTTCTATCTTCCAGCCTCTAGA
CCCGGGTCACTGGTGAGCCTTCCAATTCTAGATTGTAGCTCATTCCAGAT
ATAGTCAAGTTGACCACCAGGAATAGCCACTACAGTGGCTTAGCCACAGG
TCTAACTCTCGTGGCCATAGGTAAGAAGAGGCTGAAGTGAATGGCTGCCG
GTGTTAGTCCCTTGGCAAGCTGAGTGCCAGAGAGGAAAAGGGGCATGACA
GTGCGCTCCCTCCCTGCTCGTTCCTAGTGTTGTGGAAGTTTATTTTTCTC
CTGCCCCCTCCGATTCCTTATTCAACTAACTAAAGGAGTTTGAGAACTAG
ATGGTAAAGTTACAACGTGAGGATCCCTTTGTAGAGACTGAATAATTACT
TCCTTCCGTTTCCGTGCATAGGGGTCTAGAAGCTTCTGTTTTATTTGAAT
CAAACTTCCTATGAGAGGATCCAATCCTTGGCTCACAGAGTACCATTCGG
ATTACTAATTCTATTTCCCACTTATGATACCTCATAATCCCTCCTGCTTC
GGTACCATTCCACTGTCCCTGACTGCGATCGTCCCTTTAGCTCTACCTTT
ATGGCTGTGCCCTAATTTTCATTGAATTCTAT
CTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACCTCCTTGTGGCCTCAGCTGCCTTTAAATGTGT
CCTTTGTACACTTTGGCCCCCTGCCGCAGACCTCGAGCAGCTCCCTGCCC
TAGAGCCAGGACTTGGTCACCACTGTGCAACAGTGGTCAGGAGTGACCTG
TCAGCAGCACTCCAGACCCTGGGGTGGGTGTGGAGGAGGCAGAGGGGATT
GGGGTGGGTGTGCACTTTCCTTTTATATTACCTCTAGTTCATCTCTATAT
TCACATTCATTCTTTTTTCTTAACTATTTAATATTCATCTCCGATTTCAC
TATTTTTTTTTTTTTCCCCCCCCCCCCCCTATTTTATAATTTTCTCCTCT
TCTTCTTTCTCTCTCCTCTTCCCTCTTCGTAATTAAATGACTCTCCCGTG
GTTGTTTTTTTCTTACCATCTTATCTATTCCTTTTCCCTTTTCTCTTTTC
CCTTTATCCCTCTTTCCTTTATTTTTTCCTCTCTTCTTTCCTTTTTTCTC
TTCTTATTCTTCTTTTTCCCTTTCCGTTTTTCCTTCATTTCTCTTACCCT
TTCGTTCTTTTTTTCTCCTTCCTTCCTTTCCTTTCTTCGTTTCTCCCTCC
TTTCTATTCCCTTCCTTCCTTCCATCCTTTCGCTTTCCTTCCTTTTCCCC
CCTTTTCTATTCTTCTTCCCCCCTTTTCCCCTCTCTTTCCCCCCCCCCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_a19.b1 MSMg01no069_a19.b1 CHROMAT_FILE:
MSMg01no069_a19.b1 PHD_FILE: MSMg01no069_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:41 2005
         (251 letters)



>mm_chr16_35378434_35379084
          Length = 651

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtcactggtgagccttccaattctagattgtagctcattccagatatagtcaagttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggtcactggtgagccttccaattctagattgtagctcattccagatatagtcaagttgac 459

                                                                       
Query: 61  caccaggaatagccactacagtggcttagccacaggtctaactctcgtggccataggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caccaggaatagccactacagtggcttagccacaggtctaactctcgtggccataggtaa 399

                                                                       
Query: 121 gaagaggctgaagtgaatggctgccggtgttagtcccttggcaagctgagtgccagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaagaggctgaagtgaatggctgccggtgttagtcccttggcaagctgagtgccagagag 339

                                                                     
Query: 181 gaaaaggggcatgacagtgcgctccctccctgctcgttcctagtgttgtggaagttta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaaaaggggcatgacagtgcgctccctccctgctcgttcctagtgttgtggaagttta 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no069_a19.g1 MSMg01no069_a19.g1 CHROMAT_FILE:
MSMg01no069_a19.g1 PHD_FILE: MSMg01no069_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:41 2005
         (131 letters)



>mm_chr16_35217151_35217681
          Length = 531

 Score =  246 bits (127), Expect = 5e-70
 Identities = 130/131 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgccgcagacctcgagcagctccctgccctagagccaggacttggtcaccactgtgcaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcagcagacctcgagcagctccctgccctagagccaggacttggtcaccactgtgcaa 260

                                                                       
Query: 61  cagtggtcaggagtgacctgtcagcagcactccagaccctggggtgggtgtggaggaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtggtcaggagtgacctgtcagcagcactccagaccctggggtgggtgtggaggaggc 320

                      
Query: 121 agaggggattg 131
           |||||||||||
Sbjct: 321 agaggggattg 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)