BAC Information

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BAC

Clone NameMSMg01-069F03
Chromosome16 (Build37)
Map Location 25,354,071 - 25,354,320
singlet/doubletsinglet
Overlap gene5430420C16Rik
Upstream geneLOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
Downstream geneTrp63, LOC100043571, Leprel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069F03.T7 (MSMg01no069_f03.b1)MSMg01-069F03.TJ (MSMg01no069_f03.g1)
ACCAG293605AG293606
length679689
length of high quality
(start - end)
252 (53 - 304)39 (75 - 113)
definitionCHROMAT_FILE: MSMg01no069_f03.b1 PHD_FILE: MSMg01no069_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:02 2005CHROMAT_FILE: MSMg01no069_f03.g1 PHD_FILE: MSMg01no069_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CCGCGGAATTCTTTTTATCCCACAGCGTGCTCTGCTGTGACACAGACTCT
GCATAATTTACATGTCGGGATGTCTGAATTCAAGTAAACACTCAAGCTTA
TAAATAGCTCAGGACAGCATCTCCAGCTCCTAGGTGGTGGTGTTTATTGG
GACTTGAGTCAGATCTTCACTTCTTGAGGCGCTCCTGTAAACACTGCACC
ACATAGTCCCGATACTAATACTCTTGAAGTTCAGATGGCAATAAGAACAA
ACACAGAGGAAGGAATAACAGCCATGCTAAACTGCTGATGCTTGGTGAGA
TTACTAAGGCCTCAGACCTCACTATTCTCTTTTACTCCCCACAATCACCC
CTTAGACTGAATTATATCACTCCTGCTTTATTGATGTGAAAACTGATTTG
CAAAACTTAGTATGTTACTCATATCAAGTCCATATATACTGCGCTCTTGA
CCCCTTTTTTGCTACCTCCCGATCAAAATAAGGCTTATTTTTGGCTCCCT
CTTTATTTGCCTTCTCCCCTTCCTTATCCCTCCTACTTCGCCCCTTTTTT
CCCGCCCTTCCCCTTATCCCTTCTCCCCCCCTTTTTCCCCTTCCTTTTTT
TCCCGATTACTTCTTCCCCACAACTTTTT
TTTCCACGATGATTGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTCAGAAAAATTCCACAGGCTCAACTTAAATTCA
CTTCAAGAGCGAATGAGAATTCTGCGCAGGTAAACCTCCCAGCAAAGACT
TGGTGGCTGTTTGGTATTAAGTGACATAGTTTGCTTCTGCCAAGTGCTCC
ATCTTCCATGATTGACTTAACGAGGTCTGTAGGTATTAACATGAATGATG
CATATTAGCATGCGAAGGATGCGCTCACCTCTGCTCTGCAGAACCATGCT
GCTTGGTTTATGAGACCTGGTCCTTGTTTGGCTTTCTCCTTTCCTGGCTG
TTTAACTTTAGATTTTTTTTTTATCCACTCCCCCTTCGCTTGATTATTAC
TATCCACGACATTTCGATTGTGTTTCCACATGTACTGTTTTTCCCTCCAG
CATTATTTGACCCACTCTCTACCGATTTTCTTACCTACCGATTCCCCTTA
TACCCACTTTTTATGCTCTGTTCCCCTTCTCATTCCCCCACCTTTTGTTT
TGTTACTTCCGCCCCCACTCTCACCCTTTTTATCCCCCCCTTTTTTTTTA
CCCTTCTTATTATATCACAACTAAACATTTTCCCCTCCATCCACCCTATG
ATTGACCTACATCCCCCTTTCATACTTCCCTTCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_f03.b1 MSMg01no069_f03.b1 CHROMAT_FILE:
MSMg01no069_f03.b1 PHD_FILE: MSMg01no069_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:02 2005
         (252 letters)



>mm_chr16_25353853_25354504
          Length = 652

 Score =  424 bits (219), Expect = e-123
 Identities = 242/253 (95%), Gaps = 7/253 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttttt----atcccacagcgtgctctgctgtgacacagactctgcataatttac 59
           |||||||||||    |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaattctttttaggaa---cacagcgtgctctgctgtgacacagactctgcataatttac 412

                                                                       
Query: 60  atgtcgggatgtctgaattcaagtaaacactcaagcttataaatagctcaggacagcatc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atgtcgggatgtctgaattcaagtaaacactcaagcttataaatagctcaggacagcatc 352

                                                                       
Query: 120 tccagctcctaggtggtggtgtttattgggacttgagtcagatcttcacttcttgaggcg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 351 tccagctcctaggtggtggtgtttattgggacttgagtcagatcttcacttctcgagggg 292

                                                                       
Query: 180 ctcctgtaaacactgcaccacatagtcccgatactaatactcttgaagttcagatggcaa 239
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ctcctataagcactgcaccacatagtcccgatactaatactcttgaagttcagatggcaa 232

                        
Query: 240 taagaacaaacac 252
           |||||||||||||
Sbjct: 231 taagaacaaacac 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)