BAC Information

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BAC

Clone NameMSMg01-069F24
Chromosome16 (Build37)
Map Location 52,168,010 - 52,168,177
singlet/doubletsinglet
Overlap geneCblb
Upstream geneLOC627543
Downstream geneAlcam, LOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069F24.T7 (MSMg01no069_f24.b1)MSMg01-069F24.TJ (MSMg01no069_f24.g1)
ACCAG293647AG293648
length772853
length of high quality
(start - end)
168 (248 - 415)47 (129 - 175)
definitionCHROMAT_FILE: MSMg01no069_f24.b1 PHD_FILE: MSMg01no069_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:07 2005CHROMAT_FILE: MSMg01no069_f24.g1 PHD_FILE: MSMg01no069_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCCCCCCCCCCTTTTTCCCCCCTCCCCCCCTCTCCCCTCTCTCCCT
ATTCCATTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGCG
CGGAATTCATCATGATTCCAAATAAAAAATTAGGGAAGAGTTTGAATCCA
AGTCCAGGGACTATCCAAGAGGTTGACTAGAAATAGGATGAAAATCCACC
TCTCAGTAAGAGGTAACTTTTGTAGTTGGAATCCTCATCAGAACCAAAAC
TGAACCCTTTACTACTATATGAGAACTAGTGTTAATATTACAGAATATAA
TTCCATACCCAAAGGAAGTCTTCATCCCACTTTTCAGATTATAACATCTG
AAAAAGTTAACAGCCCTGCTCTGGAAGGTCAGCTTTGTATTTACATTAAC
GACAACATCCAAAAGATTTTTGAAAGAGGGGGCCTTCTAAGAACTGGCCG
TGGTGTCAACTACTCTATGTATTTCTGAAGTCATTCATAAATAACTTGTA
TCCTGCACCCTGAGGATAAATGTCTCTTCCCATGAGAGCTTGTTTCAAGG
CTCTTCCCATGACAAGCCTCACCATGCACAAATGAGCCAACAGAGACTAA
AGGAGAAACATTAAACTAAACCAAATCCTAGAAATTTTCTCTAGTTGGGA
CTCCTGGCCGTGGGAAGTCCTTTGATGACCGGTTCTTATCGTCTTTTGTT
CCTTACTCCACTGTTTTTTTTTTATCGTATTCTCCTTTATCTTTTACTGT
ATTGACTTATCCCTCACGACCT
NTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTCCCCTCTTTTCCCACCTTC
TTCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTTTTCAGAGGGTTTG
TAGGATCCCAAGAGATGTTCTGGTTTGCTGGAGGCTTGTGATTGTTGTTT
GCTTGCTGTTAGTTTTTGTTGGCTGCTGTTTGTTAAGTATTCTTGCTGAA
TGAGGAGGAGGAGGAGGAGTAGCAGGAGCATTAGTTTGAACATTATGAGG
AGGTTAGACCATTCAGTACCTTCACGGATGAGGTACAGTAGGATTAGGAG
TTATACCCTTTTTTTCTTTCCTACTTTTTTTTTTTCTTTCCTCCCTTCCA
TTTCCCCTCCTCCCCTCTCTTTTTTTCCTCCCCCCCTCCCCCCCCCTTTT
CCTTTCCTCCCCTCTTTCTCTCCCCTTTTCCCCCCCCCCCTCCCATTTAA
CTTTTCCTTTTCTTTCCTCTTTCTTTCCCTTCCTCTTTTTCTTATTTCTC
CTTTTTTTTTCTCCCTCTTCTCCCCCTCTTCCTTCCCTCCCCACTTATAT
CCTATCTCCTCTTTTTTTTTCCCCCCTTTCCTCCCTCTTTTTTTTTCACC
CTTCCCTCTGTCTCTTCGCCCCTTTTTCTTTCTCCTTTTCTTTCCTTCTC
CTTCTTTACCCCCCTTTTTTTTTCCCCCTCGCTTCTCCTCTCAATTTCCG
CTTCCCCTCTTTCCCTCTTTTTTTTATTTCTTCCCCTCTCCACGTTCTTT
CCCTTCCTCTCCTACCTTTATTCTCCTATTTTCTTTACCTCCCTCCCCCA
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_f24.b1 MSMg01no069_f24.b1 CHROMAT_FILE:
MSMg01no069_f24.b1 PHD_FILE: MSMg01no069_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:07 2005
         (168 letters)



>mm_chr16_52167810_52168377
          Length = 568

 Score =  271 bits (140), Expect = 2e-77
 Identities = 161/168 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgaaccctttactactatatgagaactagtgttaatattacagaatataattccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 368 aactgaaccctttactactatatgagaactagtgttaatattacagaatataaatccata 309

                                                                       
Query: 61  cccaaaggaagtcttcatcccacttttcagattataacatctgaaaaagttaacagccct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 308 cccaaaggaagtcttcatcccacttttcagattataacatctgaaaaagttaacagcctt 249

                                                           
Query: 121 gctctggaaggtcagctttgtatttacattaacgacaacatccaaaag 168
           ||||||||||| ||||||||| |||||||| | | |||||||||||||
Sbjct: 248 gctctggaaggccagctttgtgtttacatttatggcaacatccaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)