BAC Information

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BAC

Clone NameMSMg01-069M01
Chromosome16 (Build37)
Map Location 89,689,620 - 89,834,048
singlet/doubletdoublet
Overlap geneTiam1
Upstream gene2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M01.T7 (MSMg01no069_m01.b1)MSMg01-069M01.TJ (MSMg01no069_m01.g1)
ACCAG293936AG293937
length677690
length of high quality
(start - end)
193 (114 - 306)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no069_m01.b1 PHD_FILE: MSMg01no069_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:35 2005CHROMAT_FILE: MSMg01no069_m01.g1 PHD_FILE: MSMg01no069_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,833,856 - 89,834,048)(89,689,620 - 89,689,903)
sequence
CGGCCGCTATACGACTCCTATTTGCAGAGGATCCGCGGAATTCTGTAAAT
TGTCATCTCTATACGAATTTGGGGTTGGTGGTGGAGACAAAAACAGCAGC
CTATTTTCTCCCGATAGAAAGAAGCAACTTCCTGCATTTTAGTTCCGTAA
AAATGATCAAGAGATACGCGTGTGTACAGTACGCTGTTGCCGGTGTTCCG
AGAGACCAGCGTCTTGGAGAGTCAACCAGAATTGGCATTTAAAAAGGAAA
ATGGGCCGAGGCTTACAACATGTTGAAGCAGTAGCGATTGTTGAGGTGAT
TCTCTGTGGTCAGAAGAGGAGGTCTGAAGCAGTGCTTCTCAACCCTGTTT
TTTGCACAGCACGCATCCGGCTCATCAGAGTCACCCGTTAGGATTCACAG
CAATAGTAAAGTTACATTTATAAGCAGTATGGCGATAATTTTATGGTAGG
GGTCAGCACAACATGTTGAGCTGTATTAAAGACCCAGAGCATTGGTAAGG
TTGAGAGCCATGGCTCTAGAGTCTTCTCAAACCTGTGTGAGTACTGCATA
CTGCTTTTTGCCTCCCTGGCTTTGTGAGACCCCCTACTACTTCCATTAGT
CGTTCTTGTCCCTTCCTGACTGAACCTTCTAATTTGTTATGTTTTTGCTC
CGTGCGCTATTTATCCCTTTCCTATTC
ATCGATGTAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCCGAAATTCTCAGCTCCTACTGCACCATGCCTGCC
TGGATGCTGCCATGTTCCCACCTTGATGGTAATGGACTGAACCTCTGAAT
CTGTAAGCCAGCCCCAGTTAAATGTTGTTTTTTATAAGACTTGCCTTGGT
TGTGGTGTCTGTTCACAGCAGTAACACCCTAACTAATACAATATCCCAAG
TCACATGGAAAAGAAGGCAACAGAGATTCCCCAATCCAACTCAACATTCT
AACACTTTGTCCCGAGTAAGTCCCTCCCATCATCCTGATGCCCAGGAAAT
CCAGTCCATTTTTTTTTGACACCCCCCTATATTCCGAGTCTTGCCTGATT
TCCTTAGTGTCCAACTTATATAAAAATCCTTCCCAATGCTCAGGATCAAT
CAATCACGACATGTTCCCCATGGGACGTATCTATAGCTCATTGATTTGTA
TACCCGCTCTCGTCCTATGACTGTCCTTCAGTAATTCCCCCTTTACCTGA
TGCCGTAATACATCTGATTCTACTTTCTACTCCAACGTCAGCCCTACTTA
TATCCCTACTACTTTCCCTTCTCCCTCACCTCACCCTTACTTCCATTTCC
CCTTTCTTGCTATTCCCCATATCCCCCATTTCCGCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m01.b1 MSMg01no069_m01.b1 CHROMAT_FILE:
MSMg01no069_m01.b1 PHD_FILE: MSMg01no069_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:35 2005
         (193 letters)



>mm_chr16_89833656_89834248
          Length = 593

 Score =  342 bits (177), Expect = 6e-99
 Identities = 189/193 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaaagaagcaacttcctgcattttagttccgtaaaaatgatcaagagatacgcgtgt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 393 atagaaaggagcaacttcctgcattttagttccgtaaaaatgatcaagagacacgcgtgt 334

                                                                       
Query: 61  gtacagtacgctgttgccggtgttccgagagaccagcgtcttggagagtcaaccagaatt 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 333 gtacagtacgctgttgccggtgttcccagagaccagcgtcttggagagtcaaccagaatt 274

                                                                       
Query: 121 ggcatttaaaaaggaaaatgggccgaggcttacaacatgttgaagcagtagcgattgttg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 273 ggcatttaaaaaggaaaatgggccgaggcttagaacatgttgaagcagtagcgattgttg 214

                        
Query: 181 aggtgattctctg 193
           |||||||||||||
Sbjct: 213 aggtgattctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no069_m01.g1 MSMg01no069_m01.g1 CHROMAT_FILE:
MSMg01no069_m01.g1 PHD_FILE: MSMg01no069_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:36 2005
         (287 letters)



>mm_chr16_89689420_89690106
          Length = 687

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcagctcctactgcaccatgcctgcctggatgctgccatgttcccaccttgatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctcagctcctactgcaccatgcctgcctggatgctgccatgttcccaccttgatggt 260

                                                                       
Query: 61  aatggactgaacctctgaatctgtaagccagccccagttaaatgttgttttttataagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggactgaacctctgaatctgtaagccagccccagttaaatgttgttttttataagac 320

                                                                       
Query: 121 ttgccttggttgtggtgtctgttcacagcagtaacaccctaactaatacaatatcccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgccttggttgtggtgtctgttcacagcagtaacaccctaactaatacaatatcccaag 380

                                                                       
Query: 181 tcacatggaaaagaaggcaacagagattccccaatccaactcaacattctaacactttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacatggaaaagaaggcaacagagattccccaatccaactcaacattctaacactttgt 440

                                                       
Query: 241 cccgagtaagtccctcccatcatcctgatgcccaggaaatccag 284
           |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 cccgagtaagcccctcccatcatcctgatgcccaggaaatccag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)