Query= MSMg01no070_n06.b1 MSMg01no070_n06.b1 CHROMAT_FILE:
MSMg01no070_n06.b1 PHD_FILE: MSMg01no070_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:02 2005
(546 letters)
>mm_chr16_74088891_74089837
Length = 947
Score = 1019 bits (527), Expect = 0.0
Identities = 539/543 (99%), Gaps = 1/543 (0%)
Strand = Plus / Minus
Query: 5 gaattccattttcaccctaaagcctttaatacacaaaatccttgattcagggaacactct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaattccattttcaccctaaagcctttaatacacaaaatccttgattcagggaacactct 688
Query: 65 caatgaaagaaatatggttaagatccccctcaaaagatgttaattgaaatagattaaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caatgaaagaaatatggttaagatccccctcaaaagatgttaattgaaatagattaaaag 628
Query: 125 agaacacagacagaattataaaaacaataatgcatggataagatttaataattcacagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agaacacagacagaattataaaaacaataatgcatggataagatttaataattcacagat 568
Query: 185 tctcttatttttaatccatagattga-tttttttttagtgcagaagtaaagatagagtct 243
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 567 tctcgtatttttaatccatagattgattttttttttagtgcagaagtaaagatagagtcc 508
Query: 244 gtaagtaattttgcttaaagagtatagtctgccattcaaaaatgctatctcgcacaatgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtaagtaattttgcttaaagagtatagtctgccattcaaaaatgctatctcgcacaatgt 448
Query: 304 agtgcaattaacttgactcctctaatttgaagttcatcaaaatttattcaaatgaattag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agtgcaattaacttgactcctctaatttgaagttcatcaaaatttattcaaatgaattag 388
Query: 364 aaataatatgaaaaattcgattcatgtgctgatgttcatttttacgctaatggactttct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaataatatgaaaaattcgattcatgtgctgatgttcatttttacgctaatggactttct 328
Query: 424 gctttattctcttctggtaactttgaatgctgaggcagcaccatagaacatgccaacctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctttattctcttctggtaactttgaatgctgaggcagcaccatagaacatgccaacctt 268
Query: 484 ggcatattagtcacgaagcctttcacctaattggagtgtcattcgactgcataagcagcc 543
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 ggcatattagtcacgaagcctttcacctaattgcagtgtcattcgactgcataagcagcc 208
Query: 544 taa 546
|||
Sbjct: 207 taa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 947
Length adjustment: 10
Effective length of query: 536
Effective length of database: 937
Effective search space: 502232
Effective search space used: 502232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_n06.g1 MSMg01no070_n06.g1 CHROMAT_FILE:
MSMg01no070_n06.g1 PHD_FILE: MSMg01no070_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:02 2005
(585 letters)
>mm_chr16_74006322_74007306
Length = 985
Score = 1077 bits (557), Expect = 0.0
Identities = 578/585 (98%)
Strand = Plus / Plus
Query: 1 attatcaaagaaacattgatctagattttgtgctaaccccaaatataacagataagagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatcaaagaaacattgatctagattttgtgctaaccccaaatataacagataagagga 260
Query: 61 ctcattctgaggcattggcgacattccaaatgactaagtgtaatatggtgaatctttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ctcattctgaggcattggcgacattccaaatgactaagtgtaatatggtaaatctttttc 320
Query: 121 tctagtgagaagtgtgcaattgatgaaattcaaaatactttctacaacccatatctaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagtgagaagtgtgcaattgatgaaattcaaaatactttctacaacccatatctaatc 380
Query: 181 aaacttatatagaatctcaaaatgcagcaatgcatgcgtacaattccaattgtgatttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacttatatagaatctcaaaatgcagcaatgcatgcgtacaattccaattgtgatttgc 440
Query: 241 atggtgaaataatcttgttgtcactttaaaactcaactgtctctcctaagtcatctttgg 300
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 441 atggtgaaataatcttgttgtcactttaaaactcaattggctctcctaagtcatctttgg 500
Query: 301 acagattctcacttgtaagttctcactgattccaaattgggcttccccgaagaacacaaa 360
||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 501 acagattctcactcgtaagttctcaatgattccaaattgggcttccctgaagaacacaaa 560
Query: 361 gaagcttcatttggaataacagagtgattgttttctgaagtcttacgtgtgtctgaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagcttcatttggaataacagagtgattgttttctgaagtcttacgtgtgtctgaattt 620
Query: 421 gaatttgattcttactttcccttaaaatcctttattagaagaatccaggcacttttctct 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagttgattcttactttcccttaaaatcctttattagaagaatccaggcacttttctct 680
Query: 481 agactatgtgtttatttgaaaatatattcccctatttgtattagaattagaacataattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agactatgtgtttatttgaaaatatattcccctatttgtattagaattagaacataattt 740
Query: 541 tctcctctctgtatgatatttgttttagaatactctttatgcaat 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctcctctctgtatgatatttgttttagaatactctttatgcaat 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
