BAC Information

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BAC

Clone NameMSMg01-072F10
Chromosome16 (Build37)
Map Location 75,232,547 - 75,388,475
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072F10.T7 (MSMg01no072_f10.b1)MSMg01-072F10.TJ (MSMg01no072_f10.g1)
ACCAG295906AG295907
length708715
length of high quality
(start - end)
127 (182 - 308)322 (136 - 457)
definitionCHROMAT_FILE: MSMg01no072_f10.b1 PHD_FILE: MSMg01no072_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:02 2005CHROMAT_FILE: MSMg01no072_f10.g1 PHD_FILE: MSMg01no072_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,232,547 - 75,232,673)(75,388,154 - 75,388,475)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGGACGGTCCGCGGAAT
TCAACCAATTACTAGTACCAGAGTNTTGGTAATGGGACATTTGAGGAAAA
GCTATAGAGCTGAATTTATTTCACAAAGAGAACAGAAGGCTTCCAGTGTA
CATAGCTGAGGTGCGGAGGCTGGGGGTTTACAACTTTCAGCTATATTAAG
CAATAGCTTATGGGAGGTGCTAAACAGCTGTTCTATTCCTGCTCTGGCAT
TATTTAGGCTTAGGAGTCCCAGCCACCAGGAATAGGAACAACTGACTAAA
CTTACAGTCTGACATTATATGCTTGTCTTACNAAAAGCAAACAACAACAA
CAACAACTTATATTCTCTACAATTAGAGCTATTGGAAATTGAACTAAGTT
GCCTTAGGAGGTAGAATGCCCTTGATGCTCTGGCTACTCGTGGGACCATG
TCTTGTCAAACTCTTTTTAAAACAACAGCTGGTCTCATTGTAGACTGGAA
TGACAATGGAGGGAGCATGGATAAAAGATCGATGGACATTTATCTCCCTG
TGACCATTATCTGACAGCAGATCAATATCTGCCAGGGATGGTCGACTTGT
TTTTGAAGACTCCTTAATGATAGCCTCATAACAGATAAATGAATCGCCTG
ATGTTTTTTCTTAATTAGCGCGCAATTATCTACGGTGTAATTGTCGACTT
TGCTTCCG
NNCCGATGAAGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGTGCTACATAAGGTCATGAT
TTTATGTAACCACAGGCTACTGGGGTAGATCAGAAAGTCATTTTATTACC
AGAATACTGTGTATTTTATGAAGACCAAAGCAAAGGTTCAGTGAATTATG
TAAGATGATCAAAACACAATAAATAATAGGCCCTACCACTTAGTCAATGT
GAAAAATCACTGTGTGAAAAATATATAAAAAACTGAAAATAATGGGCTTA
AATAAATATTTCTAGCCCAGAGCTTAAAAAGAAAAACCCTGTTTGGTAGT
GCTCTTATTACCAGTATGATGCAAGTAAATATATCATAAACCCATTGTTT
TGAGTAGTAACTGTGCTTGAGGAGTTGTATAGGGGTCAGTGACATGGCTC
AGTGGGTACTGTATCAGTGACTTTGTGTAGATATGATAAAAATACCATTT
CCAAAACAATTAACAGAATACATAGTTTATTTCAGTTTAGGATTTCAGAA
GAAGAGCTCAAAATAGCAGTACAGGGATGGGAACAGATGGTGACACAGGT
GACTAAGAAATCATAGCTTCAACCACACTCATGAAATAAATAGGGACTGG
AAATTTATTGAGTCTGTGGACTCTCAAAGTCAACCATCCTGTGATCTGTG
TCCTCCAGAAAGGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_f10.b1 MSMg01no072_f10.b1 CHROMAT_FILE:
MSMg01no072_f10.b1 PHD_FILE: MSMg01no072_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:02 2005
         (127 letters)



>mm_chr16_75232347_75232873
          Length = 527

 Score =  223 bits (115), Expect = 4e-63
 Identities = 124/127 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactttcagctatattaagcaatagcttatgggaggtgctaaacagctgttctattcctg 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aactttcagctatattaagcaatagcatatgggaggtgctaaacagctgttctattcctg 260

                                                                       
Query: 61  ctctggcattatttaggcttaggagtcccagccaccaggaataggaacaactgactaaac 120
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggcaatagttaggcttaggagtcccagccaccaggaataggaacaactgactaaac 320

                  
Query: 121 ttacagt 127
           |||||||
Sbjct: 321 ttacagt 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space:    61761
Effective search space used:    61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no072_f10.g1 MSMg01no072_f10.g1 CHROMAT_FILE:
MSMg01no072_f10.g1 PHD_FILE: MSMg01no072_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:02 2005
         (322 letters)



>mm_chr16_75387954_75388675
          Length = 722

 Score =  600 bits (310), Expect = e-176
 Identities = 319/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcattttattaccagaatactgtgtattttatgaagaccaaagcaaaggttcagtgaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 522 agtcattttattaccagaatacagtgtattttatgaagaccaaagcaaaggttcagtgaa 463

                                                                       
Query: 61  ttatgtaagatgatcaaaacacaataaataataggccctaccacttagtcaatgtgaaaa 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttatgtaaggtgatcaaaacacaataaataataggccctaccacttagtcaatgtgaaaa 403

                                                                       
Query: 121 atcactgtgtgaaaaatatataaaaaactgaaaataatgggcttaaataaatatttctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atcactgtgtgaaaaatatataaaaaactgaaaataatgggcttaaataaatatttctag 343

                                                                       
Query: 181 cccagagcttaaaaagaaaaaccctgtttggtagtgctcttattaccagtatgatgcaag 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 342 cccagagcttaaaaagaaaaaccatgtttggtagtgctcttattaccagtatgatgcaag 283

                                                                       
Query: 241 taaatatatcataaacccattgttttgagtagtaactgtgcttgaggagttgtatagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taaatatatcataaacccattgttttgagtagtaactgtgcttgaggagttgtatagggg 223

                                 
Query: 301 tcagtgacatggctcagtgggt 322
           ||||||||||||||||||||||
Sbjct: 222 tcagtgacatggctcagtgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)