BAC Information

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BAC

Clone NameMSMg01-073C12
Chromosome16 (Build37)
Map Location 83,029,631 - 83,029,960
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073C12.T7 (MSMg01no073_c12.b1)MSMg01-073C12.TJ (MSMg01no073_c12.g1)
ACCAG296525AG296526
length711712
length of high quality
(start - end)
334 (46 - 379)384 (74 - 457)
definitionCHROMAT_FILE: MSMg01no073_c12.b1 PHD_FILE: MSMg01no073_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:08 2005CHROMAT_FILE: MSMg01no073_c12.g1 PHD_FILE: MSMg01no073_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTACTGCGCAAATTTGTTGTAAACTTTGTTAACCTGAAGACGG
TATTCCACTAGTATAGAGACATTTTCAAATTGAAGTAGCAATAAAGCACA
AGTAATCCCTGCTCATAGATTGCATGGTTTAATCATTTGCCTGGATAGGT
TCTGAAAACCCCACCAGCAAGACAATTAACTATTTTCACTGAGACTATTC
CAATTTCCTTGGCATCACCAGTTGTCTATGGTTACCAGCTTTAAATCCAT
CCAATATACCTCAGTAACCACCTGATGATCCCACTCAAGTTTCATAACAA
TCCTTTGAAGGTGTAACTTTAAAACCCAATAAAACCAAGTAGATAATACT
CATACGCTTGGGTCTCTTTTCCTCTTTCTGTTAATAACATTTTAAAAGTG
TTTACGCTGAAATTATTCCCATTCTTCTGCTTTTTATTGGATCATCCTGA
CATTTCCTTTCTGTGGTAAAGTCAGGTTCTGTGCCTTTAACTGAATTGTC
ACTGATATCAATGAACGCTGTGGTAACTGTTGCTTTCGTTTCTTCATATG
GAGGAATGAGATATAAGCCATACTGCAGCTGTGTATATAGTCAGATTATC
AGAAGTAATAGTCCACCTATGAAGGCTATAATTCTCTGAATCATTATTGC
ATGTTTTACTG
CAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATACATTAATGTCTTCAATGACTGCTA
GTGGAACGATGAGGTAGAATATACCTGGAGGAAGTAACTCACTAGTCAAA
GGGATTTGCAAAAGCATGTCTTCACATAAAACCAGAGACACTGAAACTCA
TAGAGAAGAAAGTGGGGAAAAGCCTCAAAGATATGGGCACAGGGGAAAAC
ATTCCTGAACAGAACAGCAATGGCTTGTGCTATAAGATTGAGAATCGGCA
AATGGGGCCTCATAAAATTTGAAAGCTTCTGTAAGGCAAAAGACACTCTC
AATAAGACAAAAGGGCCACTGGATGATCACAGTCATCTATTAGGTGGAAA
ACATGTCCCCCAATGAAGGAGCTAGAGTAAAGTACTAAATTACAAAGAGC
TAAAGAGGCCTGTAACCTTATAGGAGGAATAACATTATTAACTAATCTGT
ACCCCCAGAGCTTGTGTCTCTAGTTGCATATGTATCAGAAGATGGCCCAG
TTGGCCATCAATGGGAGAAGAGGCCCTTGCTCTTGCAAAGATCATATGCT
CCAGTACAGAGGACTGCCAGGGTCCATTAGCAGGACTGTATGGGTTGGGG
AGCATGGTTAGGGGATGGTATAGAGGACTTTCGGAAATAAAATTAGGAAC
GGTTATAGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_c12.b1 MSMg01no073_c12.b1 CHROMAT_FILE:
MSMg01no073_c12.b1 PHD_FILE: MSMg01no073_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:08 2005
         (334 letters)



>mm_chr16_83029427_83030160
          Length = 734

 Score =  594 bits (307), Expect = e-174
 Identities = 325/333 (97%), Gaps = 6/333 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagtac--tgcgcaa-atttgttgtaaactttgttaacctgaagacggtattcc 61
           ||||||||||||  ||   || ||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaattccagtacagtg---aacatttgttgtaaactttgttaacctgaagacggtattcc 478

                                                                       
Query: 62  actagtatagagacattttcaaattgaagtagcaataaagcacaagtaatccctgctcat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 actagtatagagacattttcaaattgaagtagcaataaagcacaagtaatccctgctcat 418

                                                                       
Query: 122 agattgcatggtttaatcatttgcctggataggttctgaaaaccccaccagcaagacaat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agattgcatggtttaatcatttgcctggataggttctgaaaaccccaccagcaagacaat 358

                                                                       
Query: 182 taactattttcactgagactattccaatttccttggcatcaccagttgtctatggttacc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 taactattttcactgagactattccaatttccttggcatcaccagttgtctatggttacc 298

                                                                       
Query: 242 agctttaaatccatccaatatacctcagtaaccacctgatgatcccactcaagtttcata 301
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agctttaaatctatccaatatacctcagtaaccacctgatgatcccactcaagtttcata 238

                                            
Query: 302 acaatcctttgaaggtgtaactttaaaacccaa 334
           ||||||||||||| |||||||||||||||||||
Sbjct: 237 acaatcctttgaaagtgtaactttaaaacccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)