BAC Information

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BAC

Clone NameMSMg01-075A02
Chromosome16 (Build37)
Map Location 38,864,505 - 39,040,519
singlet/doubletdoublet
Overlap geneIgsf11
Upstream geneLrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075A02.T7 (MSMg01no075_a02.b1)MSMg01-075A02.TJ (MSMg01no075_a02.g1)
ACCAG297925AG297926
length689679
length of high quality
(start - end)
450 (53 - 502)598 (82 - 679)
definitionCHROMAT_FILE: MSMg01no075_a02.b1 PHD_FILE: MSMg01no075_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:34 2005CHROMAT_FILE: MSMg01no075_a02.g1 PHD_FILE: MSMg01no075_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,864,505 - 38,864,952)(39,039,922 - 39,040,519)
sequence
NTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCCAGGCTTATGGACTTGACAACATGTTAAACTCATTTT
TCTCTCAACATCTTCCAGGCCAGGGAAAGTTTCCTCCTCCCAGAGAACTG
TGAAATGACAGTGATGAACTGGAAGTCGTGGAGTGACTCACTGTGATTGT
GAGCCTCTCGGGCGGGCTTCATGTCCATGGACAGCTGAAGCCCATAGGGT
GGGGTTTCTCCTCACTATAACCTAGTGTTGGAACACAAAATGCCTCTCTT
AAAACAGTGAAATATCTATGTGCACAAAAGCCTAGCAAATGACAAGGCAG
TCTATGGGAAATGCTGTGTAAATTCTGTAGCCTCAGTTTTGAAGTTCTGA
TAGAAAGTGCAACTATTTAATTCACGCCATTGAATTTGACTTTGATAGTA
AGATTAAAGTTAACCAGATAGTGTGCAGTTTTGCTCAGCTTCATTGATGA
CAGAACACAGATTATGGCACCTATTGCTCTGTCAGAACCATATATGGAGA
AATCTGCATCCCTTCATAAGCCTTTTTTAAAATTTATTTACCTTTTCCCG
TATTTACTCCCTAACCCTAGTTTTCCTCCTCCCAGAAATCCCCTTATCCC
ACCCCCTTTATCCCCTGGCTTCCACCCCACCCTTCCCAC
NNNNCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTTTATGTAAATTGC
AGATGCCCTAGGAAACTGTTGAGAGAGAATTAAAAGGTTCTGAGGCTCCT
TAATGTGTGGAAACTTAAAAGGCAGACTCAAAATGCTTGACTGCACAGGG
AAAAAATTACACTAATGGTCTGGTCGGAGATGAACACTTTCTTCAGTAAT
TTCTTTAAAGTGAGCAAAGAATGACTAGAACAAATCAGGGTTCAACCCAT
GCCATGCCTTTAATGTGAGTTTCCTTGGGTGGGATCGCTTCTGACATCAG
AGGACCAAACCCCTGGTTCCATAACCCACAAAGTTTGTGAGCCCAACCTG
AGGCACTTTAAGCCTGTTTCCTCATCTGCAATATTAGCATGTTGGAGGAC
ATAAGGATTAGGTGTGTTTGCACACCGTGATGGATATGCCTTCTAGCATC
CAGTGGGTTCTGTGTAAATACTGATGCTCTCCGCCCCTCATATCCTGCTT
GGTGATTTAAATTAGTAGTGATCGGAATGTGAATGTGCTATTTTGTAATA
AAATGGGAAGGGGAAATGGTAACAAGAGACTATTTGGGCAGACAGATAAT
AATTATCAAGTGTTCTCCCTCCTTAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_a02.b1 MSMg01no075_a02.b1 CHROMAT_FILE:
MSMg01no075_a02.b1 PHD_FILE: MSMg01no075_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:34 2005
         (450 letters)



>mm_chr16_38864303_38865152
          Length = 850

 Score =  859 bits (444), Expect = 0.0
 Identities = 447/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctcccaggcttatggacttgacaacatgttaaactcatttttctctcaacatctt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctcccaggcttatggacttgacaacatgttaaactcatttttctctcaacatctt 262

                                                                       
Query: 63  ccaggccagggaaagtttcctcctcccagagaactgtgaaatgacagtgatgaactggaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaggccagggaaagtttcctcctcccagagaactgtgaaatgacagtgatgaactggaa 322

                                                                       
Query: 123 gtcgtggagtgactcactgtgattgtgagcctctcgggcgggcttcatgtccatggacag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtcgtggagtgactcactgtgattgtgagcctctcgggcgggcttcatgtccatggacag 382

                                                                       
Query: 183 ctgaagcccatagggtggggtttctcctcactataacctagtgttggaacacaaaatgcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgaagcccatagggtggggtttctcctcactataacctagtgttggaacacaaaatgcc 442

                                                                       
Query: 243 tctcttaaaacagtgaaatatctatgtgcacaaaagcctagcaaatgacaaggcagtcta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctcttaaaacagtgaaatatctatgtgcacaaaagcctagcaaatgacaaggcagtcta 502

                                                                       
Query: 303 tgggaaatgctgtgtaaattctgtagcctcagttttgaagttctgatagaaagtgcaact 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgggaaatgctgtgtaaattctgtagcctcagttttgaagttctgatagaaagtgcaact 562

                                                                       
Query: 363 atttaattcacgccattgaatttgactttgatagtaagattaaagttaaccagatagtgt 422
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atttaattcacgtcattgaatttgactttgatagtaagattaaagttaaccagatagtgt 622

                                       
Query: 423 gcagttttgctcagcttcattgatgaca 450
           ||||||||||||||||||||||||||||
Sbjct: 623 gcagttttgctcagcttcattgatgaca 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no075_a02.g1 MSMg01no075_a02.g1 CHROMAT_FILE:
MSMg01no075_a02.g1 PHD_FILE: MSMg01no075_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:34 2005
         (598 letters)



>mm_chr16_39039722_39040719
          Length = 998

 Score = 1149 bits (594), Expect = 0.0
 Identities = 597/598 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttttatgtaaattgcagatgccctaggaaactgttgagagagaattaaaaggttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agtgttttatgtaaattgcagatgccctaggaaactgttgagagagaattaaaaggttct 739

                                                                       
Query: 61  gaggctccttaatgtgtggaaacttaaaaggcagactcaaaatgcttgactgcacaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaggctccttaatgtgtggaaacttaaaaggcagactcaaaatgcttgactgcacaggga 679

                                                                       
Query: 121 aaaaattacactaatggtctggtcggagatgaacactttcttcagtaatttctttaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaaattacactaatggtctggtcggagatgaacactttcttcagtaatttctttaaagt 619

                                                                       
Query: 181 gagcaaagaatgactagaacaaatcagggttcaacccatgccatgcctttaatgtgagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gagcaaagaatgactagaacaaatcagggttcaacccatgccatgcctttaatgtgagtt 559

                                                                       
Query: 241 tccttgggtgggatcgcttctgacatcagaggaccaaacccctggttccataacccacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tccttgggtgggatcgcttctgacatcagaggaccaaacccctggttccataacccacaa 499

                                                                       
Query: 301 agtttgtgagcccaacctgaggcactttaagcctgtttcctcatctgcaatattagcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 498 agtttgtgagcccaacctgaggcactttaagcctgtttcctcatctgtaatattagcatg 439

                                                                       
Query: 361 ttggaggacataaggattaggtgtgtttgcacaccgtgatggatatgccttctagcatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttggaggacataaggattaggtgtgtttgcacaccgtgatggatatgccttctagcatcc 379

                                                                       
Query: 421 agtgggttctgtgtaaatactgatgctctccgcccctcatatcctgcttggtgatttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agtgggttctgtgtaaatactgatgctctccgcccctcatatcctgcttggtgatttaaa 319

                                                                       
Query: 481 ttagtagtgatcggaatgtgaatgtgctattttgtaataaaatgggaaggggaaatggta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttagtagtgatcggaatgtgaatgtgctattttgtaataaaatgggaaggggaaatggta 259

                                                                     
Query: 541 acaagagactatttgggcagacagataataattatcaagtgttctccctccttaacag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acaagagactatttgggcagacagataataattatcaagtgttctccctccttaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)