BAC Information

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BAC

Clone NameMSMg01-076F05
Chromosome16 (Build37)
Map Location 92,778,978 - 92,947,329
singlet/doubletdoublet
Overlap geneEG666023
Upstream geneItsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076F05.T7 (MSMg01no076_f05.b1)MSMg01-076F05.TJ (MSMg01no076_f05.g1)
ACCAG298930AG298931
length709766
length of high quality
(start - end)
452 (44 - 495)172 (121 - 292)
definitionCHROMAT_FILE: MSMg01no076_f05.b1 PHD_FILE: MSMg01no076_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:15 2005CHROMAT_FILE: MSMg01no076_f05.g1 PHD_FILE: MSMg01no076_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,946,882 - 92,947,329)(92,778,978 - 92,779,146)
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGACCCCTTACAGGAAGCCCAGTGTTCAGCATCCGGGATCTTGTGT
TTCCACTTGGCTTATGCATAGCCAACCATTCTTCTTAGTTAGAAACAAAT
GAAAACACTGTGAAATCTAAATCTTCAGGCTTGCAAATGGAGGCAAAGAT
GCAGCTTTTCCAAGAAGGCCTCCATTTGAGCCTCTCTGGACAAGCCTTCA
GGATCCTAGCCAGGGTGCTGAGCTGTATCTGTGTCTAGAGAACAATAGGC
ATCCATGAGATGGTGTATGCAGTATGGTGAACCGGATCTCCTCCAGAGGT
CTCACTGCAGTAGGATGGGCATGGTTTCCTCTGGTGAGATGGGTGGAGTC
TCCTCCTGTGGACTCACTGCTATATCTTCTCCTTTCTGTACACACGTGTC
TCATCAGCTCATTGCCTCCCTATACTTTGGAATGATCTAGATTCCCAACA
TCAGTACTACAGGGCTGTCATCTTTATTCAGACTTGAACATCTTCTGACA
TAGCCTTCCCATCACTCGTTCACATGTTCCTAAGCTTACTACCGTGTCTG
TCTCCACAGCGACTACGGCTCTTTCTCATCCATATCCATTTTCATAACCA
GAAACTTCTGTTCCCTTTTTTGCAACATAAACTGATTCTGCATAATGAAC
TTCCCTCGT
NNNNNNNNNNNNNNNNTTTTTTTTTTTTTTCCCTTCCCCCTCTACCTTTC
ACTCGATGCTATGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTTAAACCCATCACAAAGAAAAGGTCAA
ACAAACAAGTAACAAATGAACAAGGTTTCTTGGCGGGGCCTGGAAGGTGC
TGTGCTGTGGATGGGCTTGGCCCATGAGGCAGAGCCCCAAGGAGCACCAC
TAGATTCAGGGTTGGCCCTGAAGTCACAGACCAGGGTTTGGATTCAGTTG
AGATGGCATGAGATGATTTTTGCTGGCCCCTTCTTCTGCTCTGGCAGGAG
TTTCCCAGCGCGCTCCAGAAATTACTGGTCATGACTTGACTGGAATTCTC
TAAGGAGGAGCAGTGGATCATAGGCAAGTATAGGATATCCCTGACTGAGG
CTGGTCTCTAGCCACCCCGCAATTCCACCGACTCCTGTTGGTCCAGTTCC
ACTCTGCTGAGTACTGCGATATTCACCTATTGCTTCCATAGTCCCCCTGA
CCCCGCCTTTGACACTTCTCCTTTCCTCCCCAGCTACTAATATCCTCTTG
TTTAACGCTATGCCCCCTACTGACGAAGCACAACCTGCATTACTACTACG
TGATCTGCTATTCCGCTAATTCTATTTACGAATATATTTCTTATTTTCTT
CCTAGACATGTCAATGTTCCATATCCAGAACTCCACCCCCTGGTGATTCG
TTTTCCCACAGCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_f05.b1 MSMg01no076_f05.b1 CHROMAT_FILE:
MSMg01no076_f05.b1 PHD_FILE: MSMg01no076_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:15 2005
         (452 letters)



>mm_chr16_92946545_92947396
          Length = 852

 Score =  766 bits (396), Expect = 0.0
 Identities = 435/448 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaccccttacaggaagcccagtgttcagcatccgggatcttgtgtttccact 64
           ||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 785 gaattccagacccccaagaggaagcccagtgttcagcatccaggatcttgtgtttccact 726

                                                                       
Query: 65  tggcttatgcatagccaaccattcttcttagttagaaacaaatgaaaacactgtgaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tggcttatgcatagccaaccattcttcttagttagaaacaaatgaaaacactgtgaaatc 666

                                                                       
Query: 125 taaatcttcaggcttgcaaatggaggcaaagatgcagcttttccaagaaggcctccattt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 665 taaatcttcaggcttgcaaatggaggcaaagatgcagcttttccaagaaggcctccacct 606

                                                                       
Query: 185 gagcctctctggacaagccttcaggatcctagccagggtgctgagctgtatctgtgtcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gagcctctctggacaagccttcaggatcctagccagggtgctgagctgtatctgtgtcta 546

                                                                       
Query: 245 gagaacaataggcatccatgagatggtgtatgcagtatggtgaaccggatctcctccaga 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 545 gagaacaataggcatccatgagatggtgtatgcagtagggtgaaccggatctcctccagt 486

                                                                       
Query: 305 ggtctcactgcagtaggatgggcatggtttcctctggtgagatgggtggagtctcctcct 364
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 485 ggtctcactgcagtaggatgggcgtggtttcctctggtgagatgggtggagtctcctcct 426

                                                                       
Query: 365 gtggactcactgctatatcttctcctttctgtacacacgtgtctcatcagctcattgcct 424
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 425 gtggcctcactgctatgtcttctcctttctgtacacacgtgtctcatcagctcattgtct 366

                                       
Query: 425 ccctatactttggaatgatctagattcc 452
           ||||||||||||||||| ||||||||||
Sbjct: 365 ccctatactttggaatgttctagattcc 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no076_f05.g1 MSMg01no076_f05.g1 CHROMAT_FILE:
MSMg01no076_f05.g1 PHD_FILE: MSMg01no076_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:15 2005
         (172 letters)



>mm_chr16_92778775_92779346
          Length = 572

 Score =  311 bits (161), Expect = 1e-89
 Identities = 167/169 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttaaacccatcacaaagaaaaggtcaaacaaacaagtaacaaatgaacaaggtttcttgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttaaacccatcacaaagaaaaggtcaaacaaacaagtaacaaatgaacaaggtttcttgg 263

                                                                       
Query: 64  cggggcctggaaggtgctgtgctgtggatgggcttggcccatgaggcagagccccaagga 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 cggggcctggaaggtgctgtgctgtggatgggcttggtccatgaggcagagccccaagga 323

                                                            
Query: 124 gcaccactagattcagggttggccctgaagtcacagaccagggtttgga 172
           |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 324 gcaccactagattcaggggtggccctgaagtcacagaccagggtttgga 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)