BAC Information

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BAC

Clone NameMSMg01-078F22
Chromosome16 (Build37)
Map Location 20,401,191 - 20,401,485
singlet/doubletsinglet
Overlap geneAbcc5
Upstream geneOlfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044
Downstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078F22.T7 (MSMg01no078_f22.b1)MSMg01-078F22.TJ (MSMg01no078_f22.g1)
ACCAG299722AG299723
length720683
length of high quality
(start - end)
---305 (73 - 377)
definitionCHROMAT_FILE: MSMg01no078_f22.b1 PHD_FILE: MSMg01no078_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:40 2005CHROMAT_FILE: MSMg01no078_f22.g1 PHD_FILE: MSMg01no078_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGGGGCNNCCCCNNNNNNNNNCNNCCCNNCCCCCCNNNNCCCNNCNN
NCCCCNCCCCCNCNCCCCCCCCCCNCCCNNNCACCNNNNAACAACNCNCA
CCCNNCNNCNCCCCCCCCNNNNNCCNNNNNNNNNCNNNNCCNNNNNTAAC
NNNANAANNCCCCCCCCCNNCCCCNCNCNNCCNCNNNNNCCCNNCCCNNN
NNNNGGGGGGGGGGGCCCNCACCCCCACANCNACCCCCCCCTNNNCANCA
ATCCCCCCCCCCCCCAACAANNNNNCCCCTCCCCCCCTNAAAAAAATAAA
AAAAATTTTTTGGGGTCCCGGGNGGGGNCCCCCCGGGGCCCCCCCTTTTA
AAAAAAAAATTAAACCCGGGAAAAAAAACCCTTTTTCCCCCAAACCCCNN
NNAAAAAATTCTCCCCTTCCGGCCCCGAAAAAAAAAAGAAGAAGAGGGGG
GAAAATTGCCCCCCCGGCCGGGCCCGGGGGGGGCCCACCAAAAATTTTCC
CCCCGTGGGGGCCCCTTTTCCCCTTTTAAACCCCCCCACCAGGGGGGTTT
AGTNGGGGGCCCCAATTCCCCCGGGTTGAAGGGGCCGGANACCCCCGTGG
GTGGGGCANAAAAAAGGGTTTTTTTAGAAAAGGAGGGAGGGAGCGCCCTA
CAGCGGGTGCCGGAGCACAAATCTCTCTCCCCCAGGAGTAGGAGAACACA
NCCCCGCGTGCGCCGCGGTG
NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTACTGAAGGAACCAGGGTAGATGGGT
GCGTGAGTTTAATTTCTTTTTTCCTTTAAGGTGGGCACTGGTTTAGCTTT
CTTTTGTTATGGTTTGCTTTGATTTTTGCCAACCTCAATTTTAGCTACCA
GGACTCGAAAAGACTCCGAAGGATGCCAGCATCCTGCCCAGCAGGCCTAG
AATCTCGCAGTCTGTCGGGAGCAGAGTGTTTCCTCGCAGCTTAGCGTGCC
AACAGCACTTGCAGTTTTAAGCAGGGTACCTCTTTAGGGAAATTTTAGTT
GTTGTTTTTTTTTTTCCTCCCCCCCCTTAATCTTCTTTCTTCATCAGTAA
GGTTTCTATTGCTCCCCCCCCTACTTCGTTGCCGCTCTGACATCCCCTCC
CTGGTGATAGCTGCCTTCCCTGATGCCTTGTACCCCACACTCCTGTAAGC
CTACATGGCTCTGCCTAGGCATTTTCTCTAATGCGCACACGCTACAGTGT
CTTATCTCCTCATCTGTGTCTCTGTTTTCACCTACCGCTTCTCTCCATTC
CTTATCTTTCTTGTCCTCTCGTCCCTGCTTTCGCTACTACCTTAGTCAAC
TGCTACCGTTCTCTCCCTCTTTCTTCTATATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_f22.g1 MSMg01no078_f22.g1 CHROMAT_FILE:
MSMg01no078_f22.g1 PHD_FILE: MSMg01no078_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:40 2005
         (305 letters)



>mm_chr16_20400991_20401697
          Length = 707

 Score =  516 bits (267), Expect = e-151
 Identities = 288/295 (97%), Gaps = 2/295 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttactgaaggaaccagggtagatgggtgcgtgagtttaatttcttttttcctttaaggt 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 495 cttactgaaggaaccagggtagatgggtgcatgagtttaatttcttttttcctttaaggt 436

                                                                       
Query: 61  gggcactggtttagctttcttttgttatggtttgctttgatttttgccaacctcaatttt 120
           ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 435 gggtactggtttggctttcttttgttatggtttggtttgatttttgccaacctcaatttt 376

                                                                       
Query: 121 agctaccaggactcgaaaagactccgaaggatgccagcatcc-tgcccagcaggcctaga 179
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 375 agctaccaggactcgaaaagactccgaaggatgccagcatccttgcccagcaggcctaga 316

                                                                       
Query: 180 atctcgcagtctgtcgggagcagagtgtttcctcgcagcttagcgtgccaacagcacttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atctcgcagtctgtcgggagcagagtgtttcctcgcagcttagcgtgccaacagcacttg 256

                                                                  
Query: 240 cagttttaagcagggtacctctttagggaaattttagttgttgtt-ttttttttt 293
           ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 cagttttaagcagagtacctctttagggaaattttagttgttgttgttttttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 707
Length adjustment: 9
Effective length of query: 296
Effective length of database: 698
Effective search space:   206608
Effective search space used:   206608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)