BAC Information

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BAC

Clone NameMSMg01-078L20
Chromosome16 (Build37)
Map Location 42,789,375 - 42,944,584
singlet/doubletdoublet
Overlap genenone
Upstream geneLsamp, Gap43
Downstream geneBC002163, LOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078L20.T7 (MSMg01no078_l20.b1)MSMg01-078L20.TJ (MSMg01no078_l20.g1)
ACCAG300003AG300004
length684684
length of high quality
(start - end)		638 (43 - 680)559 (72 - 630)
definitionCHROMAT_FILE: MSMg01no078_l20.b1 PHD_FILE: MSMg01no078_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:09 2005CHROMAT_FILE: MSMg01no078_l20.g1 PHD_FILE: MSMg01no078_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,789,375 - 42,790,008)(42,944,201 - 42,944,584)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCTGCTTCCTGGGTCTTGAATGATTAAATTCATTCTATCTGGATAA
TGCAGATAAGTTCCATATTCCAAGGTCTGATGACTACTAGCCTTAACTAC
TGTTAGGAAAGTCTGCTTGCCATCTGATATAGCATATTCGGTAGAATAAC
CCCAGGAAGTCAGAATCATGAAAACAAAACTTCTGCCCAACTCATTGTAC
ATCCATGTTGGGTAGTAATGTTTAGTCTTCTCTATTGAGGTTTTCAATGC
TAATTAAAAATTATGCCCAGGTGGAGAACTTTAGCAATTAATATGTAATG
CTTCAAACAAGGCTATCTAAAACTGAATATCCAAGATTCAGGCCTGTCTC
CATTTTTGTGCTGAGTTCAGGGGACAGCTATCTATGTATATGCAGGTGAA
CATGTATATATCTAAAAGGCAAAGGTTAACCTCCTTAATTGTTTTTCAGG
TGCCATCCATCTTGTGTTTTGCAACAGAATTTCTCACTTGCCTTATATTT
TTAACTGCCAACTGATTCAAATCCTAGCCCAAATGGAGAATCATTGTTCA
TAATTCTTCCTGGACAGTTTCTTGACAAATGTACTTTTGATCATTCCTTC
AACATCACTAGGTCTCCAGTCTTCTTCTTTACCC

GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCATCTTCCATCTTCATTCTCAGAAACAA
CTTAGAGCCATGATTCCCAGTCCTCTCCTTACTGTTCCTCTCCCCACCTT
CAGTTCCTAACTCTTGTATTGTTCTTTTCTTCCCATCTACTCCTTTCTGG
TTATAGCATCCCCTGGAGTTATTTCTCAGAAAGGAAAGGATGTGTATGTG
TTAGAGCATGTGCCTAAAATATGTTTTAACTCAGACTTGATTAGACATTT
GACTGGGTACAGAGCGACATCTTAAACATAATTTTATCAGAATTTTAAAG
CCATGATTTCTACCTTTGATTGGTCCCATTCCCATTTTCATGATGACATA
CAGTTTTATATTTTTTTCTCTGGAATTTTCTGTTATCTGCTCATTAACAG
CATTCTAGAAGTTTCTATGGACTTACCTTTGTGGTTATTTACTTTATATT
TTATGGGTATTCAGAAGACACTTTCAAGGTACAAACTGCATATTTTAATA
TCAAAACTTCATCCTATAATTTTATAATAATTTACTATCATTCTGCTCTA
CCATCTAGAAATCTTGTTGGTTAGATTTTTAACTTGTTAGATTATTTGCT
GACTTTATATTTTCTCCTCTATTTTCTATTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_l20.b1 MSMg01no078_l20.b1 CHROMAT_FILE:
MSMg01no078_l20.b1 PHD_FILE: MSMg01no078_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:09 2005
         (638 letters)



>mm_chr16_42789171_42790208
          Length = 1038

 Score = 1195 bits (618), Expect = 0.0
 Identities = 630/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctgcttcctgggtcttgaatgattaaattcattctatctggataatgcaga 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctctgctttatgggtcttgaatgattaaattcattctatctggataatgcaga 264

                                                                       
Query: 65  taagttccatattccaaggtctgatgactactagccttaactactgttaggaaagtctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taagttccatattccaaggtctgatgactactagccttaactactgttaggaaagtctgc 324

                                                                       
Query: 125 ttgccatctgatatagcatattcggtagaataaccccaggaagtcagaatcatgaaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgccatctgatatagcatattcggtagaataaccccaggaagtcagaatcatgaaaaca 384

                                                                       
Query: 185 aaacttctgcccaactcattgtacatccatgttgggtagtaatgtttagtcttctctatt 244
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 385 aaacttctgcccaactcattgtacatccatgttgggtactaatgtttattcttctctatt 444

                                                                       
Query: 245 gaggttttcaatgctaattaaaaattatgcccaggtggagaactttagcaattaatatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggttttcaatgctaattaaaaattatgcccaggtggagaactttagcaattaatatgt 504

                                                                       
Query: 305 aatgcttcaaacaaggctatctaaaactgaatatccaagattcaggcctgtctccatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgcttcaaacaaggctatctaaaactgaatatccaagattcaggcctgtctccatttt 564

                                                                       
Query: 365 tgtgctgagttcaggggacagctatctatgtatatgcaggtgaacatgtatatatctaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgctgagttcaggggacagctatctatgtatatgcaggtgaacatgtatatatctaaa 624

                                                                       
Query: 425 aggcaaaggttaacctccttaattgtttttcaggtgccatccatcttgtgttttgcaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggcaaaggttaacctccttaattgtttttcaggtgccatccatcttgtgttttgcaaca 684

                                                                       
Query: 485 gaatttctcacttgccttatatttttaactgccaactgattcaaatcctagcccaaatgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatttctcacttgccttatatttttaactgccaactgattcaaatcctagcccaaatgg 744

                                                                       
Query: 545 agaatcattgttcataattcttcctggacagtttcttgacaaatgtacttttgatcattc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaatcattgttcataattcttcctggacagtttcttgacaaatgtacttttgatcattc 804

                                             
Query: 605 cttcaacatcactaggtctccagtcttcttcttt 638
           ||||||||||||||||||||||||||||||||||
Sbjct: 805 cttcaacatcactaggtctccagtcttcttcttt 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no078_l20.g1 MSMg01no078_l20.g1 CHROMAT_FILE:
MSMg01no078_l20.g1 PHD_FILE: MSMg01no078_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:09 2005
         (559 letters)



>mm_chr16_42944201_42945159
          Length = 959

 Score =  735 bits (380), Expect = 0.0
 Identities = 383/384 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcttccatcttcattctcagaaacaacttagagccatgattcccagtcctctcctta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 ccatcttccatcttcattctcagaaacaacttagagccatgattcctagtcctctcctta 325

                                                                       
Query: 61  ctgttcctctccccaccttcagttcctaactcttgtattgttcttttcttcccatctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgttcctctccccaccttcagttcctaactcttgtattgttcttttcttcccatctact 265

                                                                       
Query: 121 cctttctggttatagcatcccctggagttatttctcagaaaggaaaggatgtgtatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctttctggttatagcatcccctggagttatttctcagaaaggaaaggatgtgtatgtgt 205

                                                                       
Query: 181 tagagcatgtgcctaaaatatgttttaactcagacttgattagacatttgactgggtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tagagcatgtgcctaaaatatgttttaactcagacttgattagacatttgactgggtaca 145

                                                                       
Query: 241 gagcgacatcttaaacataattttatcagaattttaaagccatgatttctacctttgatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gagcgacatcttaaacataattttatcagaattttaaagccatgatttctacctttgatt 85

                                                                       
Query: 301 ggtcccattcccattttcatgatgacatacagttttatatttttttctctggaattttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  ggtcccattcccattttcatgatgacatacagttttatatttttttctctggaattttct 25

                                   
Query: 361 gttatctgctcattaacagcattc 384
           ||||||||||||||||||||||||
Sbjct: 24  gttatctgctcattaacagcattc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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