BAC Information

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BAC

Clone NameMSMg01-080J02
Chromosome16 (Build37)
Map Location 82,259,770 - 82,354,024
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080J02.T7 (MSMg01no080_j02.b1)MSMg01-080J02.TJ (MSMg01no080_j02.g1)
ACCAG301373AG301374
length697705
length of high quality
(start - end)
296 (64 - 359)239 (71 - 309)
definitionCHROMAT_FILE: MSMg01no080_j02.b1 PHD_FILE: MSMg01no080_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005CHROMAT_FILE: MSMg01no080_j02.g1 PHD_FILE: MSMg01no080_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,259,770 - 82,260,064)(82,353,786 - 82,354,024)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAATCCGCGGAATTC
CAACACCATTCCCTCCAATACCGTTTTCTATTTTCCTTGAGTACATAGAA
ATACAGGCAAACATAACACTCAAAACACATAAAATGAATTAAAAAGATAA
AGAAATGAGTGTGTAACACAGTTATTGGATTATAATCCATCATTTTAAAT
TTAAAAAAAGTTCCACTGACATGGTTTTATTTTCTCTAAAAGTTTCATGT
TTATAATATCATATATTTGAATAAATAATTTTATATCTCTTCTTCAAACA
AATAATATAATTGGCAATTCCATATTATTACAAATAATTATTGAAATATT
CCATCATGCTATCATTGTGTACATCAGACAACACAGAACTTCCTGGAGAT
GGTTATTTCCTTCCCACACACTATGTTTCTCTAGGATTTGTGTATCCCAC
AGGTTCCTATACCTGTTGGTCCAACTTCCTGGGCATCACTCATTCTTGAA
AACAGTATAATGAACAATACCATTCGCTAATGACTAGCTGTAAGTACAAG
GGTATACTTTTCATTACCCTGCTTCTGCTGTTTCAGGATTTATTATACCG
CATTTAATATTTCCATTCTACTATTGTTATTGTCACATCATACCCACTTT
GATTTTTTGCTGCCACTTGTACTATTAACCTACCCCACGCTCCTTTC
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTGAGGAATTCAATATTTAAAATATCG
AGTGTAAGATATGTTGACCATACATGTATAAATGGAGAAAAATATAGTAT
TTGAAAGACTGAATATAAATTAAATGTATAAATGTTTAAAAAGTATAAAT
GAAAAGGAAATTTGCATACTTATAAAGTATACTATATTTAATTTAGTATA
AAATTCATTGTAAGGATCTCTTCACACAGTTACTATTTATATTCATGTGC
ACCCTTGTAGGTTTGCTGAAAATGTATTGCCATCGTATATATTTAGTTTG
TAAAGCATATTGTTAATTTGTAATTTTCATATTAATCATCTCTCAAGACC
TTTTATATCTTATATATATATGCATACAGCTTTCTTTCTCTCACCTTATC
TGCTTTGTTTCTTTGCTCTATTCTATTTGCCCATCCTCATTAATCTTCTG
CCCTTTTGTATTTGTTTTTTCACACGACGAGTTCATGCTTCTGCAATTAT
CCTTTTATAATTATTGATTATATCATGTTACACCATCACCAGTATTTACC
ATTTGCCAATTATTATACATTGCCAGCTTTATCTTACTACCTCAATAAAC
ACTTCACTAACCATTTATTGTCCCTCTAACTTTTGCATACTTTTCTTGTC
TCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_j02.b1 MSMg01no080_j02.b1 CHROMAT_FILE:
MSMg01no080_j02.b1 PHD_FILE: MSMg01no080_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:31 2005
         (296 letters)



>mm_chr16_82259570_82260265
          Length = 696

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaataccgttttctattttccttgagtacatagaaatacaggcaaacataacactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaataccgttttctattttccttgagtacatagaaatacaggcaaacataacactcaa 260

                                                                       
Query: 61  aacacataaaatgaattaaaaagataaagaaatgagtgtgtaacacagttattggattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacataaaatgaattaaaaagataaagaaatgagtgtgtaacacagttattggattat 320

                                                                       
Query: 121 aatccatcattttaaatttaaaaaaagttccactgacatggttttattttctctaaaagt 180
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aatccatcattttaaattttaaaaaagttccactgacacggttttattttctctaaaagt 380

                                                                       
Query: 181 ttcatgtttataatatcatatatttgaataaataattttatatctcttcttcaaacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgtttataatatcatatatttgaataaataattttatatctcttcttcaaacaaat 440

                                                                  
Query: 241 aatataattggcaattccatattattacaaataattattgaaatattccatcatg 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatataattggcaattccatattattacaaataattattgaaatattccatcatg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no080_j02.g1 MSMg01no080_j02.g1 CHROMAT_FILE:
MSMg01no080_j02.g1 PHD_FILE: MSMg01no080_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:31 2005
         (239 letters)



>mm_chr16_82353586_82354224
          Length = 639

 Score =  408 bits (211), Expect = e-118
 Identities = 232/239 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgaggaattcaatatttaaaatatcgagtgtaagatatgttgaccatacatgtata 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 439 actttgaggaattcaatatttaaaatatcgagtgtaagatatattgaccatacatgtata 380

                                                                       
Query: 61  aatggagaaaaatatagtatttgaaagactgaatataaattaaatgtataaatgtttaaa 120
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatggagaaaaatagaatatttgaaagactgaatataaattaaatgtataaatgtttaaa 320

                                                                       
Query: 121 aagtataaatgaaaaggaaatttgcatacttataaagtatactatatttaatttagtata 180
           ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
Sbjct: 319 aagtataaatgaaaaggaaatttgcatacatataaagtatactacatttaatttagtaca 260

                                                                      
Query: 181 aaattcattgtaaggatctcttcacacagttactatttatattcatgtgcacccttgta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 aaattcattgtaaggatctcttcacacagttactatttatattcatgtgtacccttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)