Query= MSMg01no080_p06.b1 MSMg01no080_p06.b1 CHROMAT_FILE:
MSMg01no080_p06.b1 PHD_FILE: MSMg01no080_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:00 2005
(516 letters)
>mm_chr16_40128178_40129091
Length = 914
Score = 853 bits (441), Expect = 0.0
Identities = 464/473 (98%), Gaps = 5/473 (1%)
Strand = Plus / Minus
Query: 5 gaattcccaatcaacaaaccaacatcgaatatacaactttcagggaatttataatttcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gaattcccaatcaacaaaccaacatcgaatatacaactttcagggaatttataatttcat 410
Query: 65 ttcttgccaaagaaaggtgagcaaaaaagctttatagagacaactattgagaaaatcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttcttgccaaagaaaggtgagcaaaaaagctttatagagacaactattgagaaaatcatt 350
Query: 125 atgttccaacactaaaatgagcaagtgacccattcctaactctaagtggagaaacacttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atgttccaacactaaaatgagcaagtgacccattcctaactctaagtggagaaacacttc 290
Query: 185 aatggcaagctatttctcacttggccattcagagaaaaaaaaataacaacatgtattctt 244
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 289 aatggcaagctatttctcacttggccattcagag--aaaaaactaacaacatgtattctt 232
Query: 245 ggagacaactatgattgttt-aaaaaaatccttttttaaaaatttatttatcttatatgt 303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggagacaactatgattgtttaaaaaaaatccttttttaaaaatttatttatcttatatgt 172
Query: 304 gaagacactatacactaacactgtcttcagacacactagaagagggcgtctgatcccatc 363
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 171 gaagacac--tacactaacactgtcttcagacacactagaagagggcgcctgatcccatc 114
Query: 364 acagatggctgtgatctaccatttggttactgagaattgaactcaggacctctggatgag 423
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113 acagatggttgtgatctaccatatggttactgagaattgaactcaggacctctggatgag 54
Query: 424 ctatcagtgctcttaaccactgagccatctctccagtaccaattttatttgtt 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ctatcagtgctcttaaccactgagccatctctccagtaccaattttatttgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 914
Length adjustment: 10
Effective length of query: 506
Effective length of database: 904
Effective search space: 457424
Effective search space used: 457424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_p06.g1 MSMg01no080_p06.g1 CHROMAT_FILE:
MSMg01no080_p06.g1 PHD_FILE: MSMg01no080_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:00 2005
(357 letters)
>mm_chr16_40053015_40053771
Length = 757
Score = 652 bits (337), Expect = 0.0
Identities = 352/357 (98%)
Strand = Plus / Plus
Query: 1 tgtgtgcttacatagatcctttcctttcagtttgagtggctatggaatgcagcgagctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tgtgtgcttacatagatcctttcctttcagtttgagtggctatggaatgcagcaagctga 260
Query: 61 ttaggagtcacttttgtaagttgcaataaatcagatatgcatatagagtgatacagaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggagtcacttttgtaagttgcaataaatcagatatgcatatagagtgatacagaaat 320
Query: 121 gcaaaattgcccaaagaaatatggcattgacctgaaccatatttctcagaaatagcagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaattgcccaaagaaatatggcattgacctgaaccatatttctcagaaatagcagaa 380
Query: 181 agcataacagtgctgccatttgttgctggaaaagctcttctagatcagtcacattaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcataacagtgctgccatttgttgctggaaaagctcttctagatcagtcacattaagaa 440
Query: 241 attgtatttgctctcatggagctacctctggctcagtgcagtaaagaacaatgcttacct 300
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 441 attgtatttgctggcatggagctacctctggctcagtgcagtaaagaacaatgtttaact 500
Query: 301 agggaggaaactctacttcttggaccagacacattgaaaatactgtttgtatgttat 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggaggaaactctacttcttggaccagacacattgaaaatactgtttgtatgttat 557
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space: 260304
Effective search space used: 260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
