MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-081J13
Chromosome	16 (Build37)
Map Location	34,462,605 - 34,632,788
singlet/doublet	doublet
Overlap gene	Kalrn
Upstream gene	Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream gene	Ropn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663
Link	Open Mouse BAC browser

Click to get alignment info.

name	Zfp148 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22661 MGI:1332234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc12a8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171286 MGI:2443672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	4632417D23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245843 MGI:3606087
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Heg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77446 MGI:1924696
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Muc13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17063 MGI:103190
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itgb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16419 MGI:96614
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Umps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22247 MGI:1298388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kalrn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545156 MGI:2685385
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 95 ESTs, 13 Proteins

name	LOC100043670 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043670
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 1433 ESTs, 6 Proteins

name	Ropn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76378 MGI:1923628
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:239839 MGI:2443448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mylk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107589 MGI:894806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptplb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70757 MGI:1918007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adcy5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224129 MGI:99673
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sec22a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:317717 MGI:2447876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdia5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72599 MGI:1919849
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sema5b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20357 MGI:107555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG546663 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546663 MGI:3648418
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 7 Proteins

name	Zfp148 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33186874 GeneID:22661 MGI:1332234
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 148 transcript_id : NM_011749.3

name	Slc12a8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144226222 GeneID:171286 MGI:2443672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 12 (potassium/chloride transporters), member 8 transcript_id : NM_134251.2

name	Slc12a8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144226247 GeneID:171286 MGI:2443672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 12 (potassium/chloride transporters), member 8 transcript_id : NM_001083902.1

name	4632417D23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373388 GeneID:245843 MGI:3606087
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4632417D23 gene transcript_id : NM_172934.2

name	Heg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50872130 GeneID:77446 MGI:1924696
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HEG homolog 1 (zebrafish) transcript_id : NM_175256.4

name	Muc13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754575 GeneID:17063 MGI:103190
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mucin 13, epithelial transmembrane transcript_id : NM_010739.1

name	Itgb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754379 GeneID:16419 MGI:96614
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin beta 5 transcript_id : NM_010580.1

name	Umps (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374909 GeneID:22247 MGI:1298388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uridine monophosphate synthetase transcript_id : NM_009471.2

name	Kalrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267521 GeneID:545156 MGI:2685385
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 62 ESTs, 10 Proteins product : kalirin, RhoGEF kinase transcript_id : XM_001481028.1

name	Kalrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267523 GeneID:545156 MGI:2685385
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 61 ESTs, 9 Proteins product : kalirin, RhoGEF kinase transcript_id : XM_001481029.1

name	LOC100043670 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267526 GeneID:100043670
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 mRNAs, 1433 ESTs, 6 Proteins product : similar to ribosomal protein L15 transcript_id : XM_001481037.1

name	Kalrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400144 GeneID:545156 MGI:2685385
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 60 ESTs, 2 Proteins product : kalirin, RhoGEF kinase, transcript variant 3 transcript_id : XM_894473.2

name	Kalrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400145 GeneID:545156 MGI:2685385
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 58 ESTs, 2 Proteins product : kalirin, RhoGEF kinase, transcript variant 10 transcript_id : XM_001001845.1

name	Ropn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254139 GeneID:76378 MGI:1923628
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ropporin, rhophilin associated protein 1 transcript_id : NM_030744.2

name	Ccdc14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803226 GeneID:239839 MGI:2443448
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 14 transcript_id : NM_172824.2

name	Mylk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126157498 GeneID:107589 MGI:894806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin, light polypeptide kinase transcript_id : NM_139300.3

name	Ptplb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872190 GeneID:70757 MGI:1918007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b transcript_id : NM_023587.2

name	Adcy5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922707 GeneID:224129 MGI:99673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate cyclase 5 transcript_id : NM_001012765.3

name	Sec22a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130956 GeneID:317717 MGI:2447876
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SEC22 vesicle trafficking protein-like A (S. cerevisiae) transcript_id : NM_133704.4

name	Pdia5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30794139 GeneID:72599 MGI:1919849
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein disulfide isomerase associated 5 transcript_id : NM_028295.1

name	Sema5b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305472 GeneID:20357 MGI:107555
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B transcript_id : NM_013661.1

name	EG546663 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267528 GeneID:546663 MGI:3648418
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 7 Proteins product : predicted gene, EG546663 transcript_id : XM_001002128.2

name	Zfp148 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6756049 CCDS:CCDS28130.1 GeneID:22661 MGI:1332234
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007276 - gametogenesis [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : beta enolase repressor factor 1 product : zinc finger protein 148 protein_id : NP_035879.1

name	Slc12a8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144226223 GeneID:171286 MGI:2443672
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; cation-chloride cotransporter 9 product : solute carrier family 12, member 8 isoform 1 protein_id : NP_599012.2

name	Slc12a8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144226248 GeneID:171286 MGI:2443672
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; cation-chloride cotransporter 9 product : solute carrier family 12, member 8 isoform 2 protein_id : NP_001077371.1

name	4632417D23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370442 CCDS:CCDS28132.1 GeneID:245843 MGI:3606087
definition	codon_start : 1 product : hypothetical protein LOC245843 protein_id : NP_766522.1

name	Heg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50872131 CCDS:CCDS28133.1 GeneID:77446 MGI:1924696
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : HEG homolog 1 protein_id : NP_780465.3

name	Muc13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754576 CCDS:CCDS28134.1 GeneID:17063 MGI:103190
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 note : lymphocyte antigen 64 product : mucin 13, epithelial transmembrane protein_id : NP_034869.1

name	Itgb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754380 CCDS:CCDS28135.1 GeneID:16419 MGI:96614
definition	GO_component : GO:0008305 - integrin complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005178 - integrin binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007160 - cell-matrix adhesion [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation product : integrin beta 5 protein_id : NP_034710.1

name	Umps (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859498 CCDS:CCDS28136.1 GeneID:22247 MGI:1298388
definition	GO_function : GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]; GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006207 - 'de novo' pyrimidine base biosynthesis [Evidence IEA]; GO:0009116 - nucleoside metabolism [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthesis [Evidence IEA] codon_start : 1 product : uridine monophosphate synthetase protein_id : NP_033497.1

name	Kalrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149267522 GeneID:545156 MGI:2685385
definition	codon_start : 1 product : kalirin, RhoGEF kinase protein_id : XP_001481078.1

name	Kalrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149267524 GeneID:545156 MGI:2685385
definition	codon_start : 1 product : kalirin, RhoGEF kinase protein_id : XP_001481079.1

name	LOC100043670 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267527 GeneID:100043670
definition	codon_start : 1 product : similar to ribosomal protein L15 protein_id : XP_001481087.1

name	Kalrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82959198 GeneID:545156 MGI:2685385
definition	codon_start : 1 product : kalirin, RhoGEF kinase isoform 3 protein_id : XP_899566.1

name	Kalrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400146 GeneID:545156 MGI:2685385
definition	codon_start : 1 product : kalirin, RhoGEF kinase isoform 10 protein_id : XP_001001845.1

name	Ropn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507710 CCDS:CCDS28137.1 GeneID:76378 MGI:1923628
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0008603 - cAMP-dependent protein kinase regulator activity [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : rhophilin-associated oppo protein product : ropporin, rhophilin associated protein 1 protein_id : NP_109669.1

name	Ccdc14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370234 GeneID:239839 MGI:2443448
definition	codon_start : 1 exception : mismatches in translation product : coiled-coil domain containing 14 protein_id : NP_766412.1

name	Mylk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126157499 GeneID:107589 MGI:894806
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : kinase-related protein; telokin; myosin light chain kinase product : myosin, light polypeptide kinase protein_id : NP_647461.3

name	Ptplb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872191 GeneID:70757 MGI:1918007
definition	codon_start : 1 product : protein tyrosine phosphatase-like protein PTPLB protein_id : NP_076076.2

name	Adcy5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370219 GeneID:224129 MGI:99673
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence TAS] [Evidence IDA] GO_function : GO:0004016 - adenylate cyclase activity [Evidence IMP]; GO:0016829 - lyase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016849 - phosphorus-oxygen lyase activity [Evidence IEA] GO_process : GO:0001973 - adenosine receptor signaling pathway [Evidence IGI]; GO:0006171 - cAMP biosynthesis [Evidence TAS]; GO:0009190 - cyclic nucleotide biosynthesis [Evidence IEA]; GO:0007191 - dopamine receptor, adenylate cyclase activating pathway [Evidence IGI]; GO:0007195 - dopamine receptor, adenylate cyclase inhibiting pathway [Evidence IGI]; GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence IGI]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007626 - locomotory behavior [Evidence IMP]; GO:0050885 - regulation of balance [Evidence IMP] codon_start : 1 exception : mismatches in translation product : adenylate cyclase 5 protein_id : NP_001012783.2

name	Sec22a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27819645 CCDS:CCDS28138.1 GeneID:317717 MGI:2447876
definition	GO_process : GO:0016192 - vesicle-mediated transport [Evidence IEA] codon_start : 1 note : SEC22 vesicle trafficking protein-like 2 product : SEC22 vesicle trafficking protein homolog A protein_id : NP_598465.2

name	Pdia5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794140 GeneID:72599 MGI:1919849
definition	GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] GO_process : GO:0006950 - response to stress [Evidence IDA] codon_start : 1 note : protein disulfide isomerase-related; protein disulfide isomerase-associated 5 product : protein disulfide isomerase associated 5 protein_id : NP_082571.1

name	EG546663 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400159 GeneID:546663 MGI:3648418
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001002128.1

name	Sema5b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305473 CCDS:CCDS28140.1 GeneID:20357 MGI:107555
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA] codon_start : 1 exception : mismatches in translation product : semaphorin 5B protein_id : NP_038689.1

clone name	MSMg01-405B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487I21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-267O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372D20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-356N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-428L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344E19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-097J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216G07
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-081J13.T7 (MSMg01no081_j13.b1)	MSMg01-081J13.TJ (MSMg01no081_j13.g1)
ACC	AG302162	AG302163
length	739	743
length of high quality (start - end)	177 (70 - 246)	123 (76 - 198)
definition	CHROMAT_FILE: MSMg01no081_j13.b1 PHD_FILE: MSMg01no081_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:51 2005	CHROMAT_FILE: MSMg01no081_j13.g1 PHD_FILE: MSMg01no081_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:51 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(34,462,605 - 34,462,781)	(34,632,666 - 34,632,788)
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATT CTCTGTTTATTCCTATACACCATTTTTTGACTGGGTTGTTCTATGCATAC TGGTTGTCAAGCATCCTTAGTGTGAGCAATCTCATCAGACTTCACAGGTT AGTGTACTTTTCTGTATATTATACATCCACCAGTAAAAGTTCATAATATG CAGAAAACATAAACATATAATAAATTTAAAGAAATAAGCGTCTGTGGCGG AAGTCGCACGATAACTGTCTTGCAGATCCTAACGTACCATATGAAACATA GTTGACAGCTTCTGCTTATTCCCAGGTTTCTTTTCTACAATGAATACTTG CCTTCTGATTTATTTATGACACATGACCCTCTTTCTCATAAGAATTTGAT GCCTCTGTCCTATTTATTGCACACCATTACATTATAGTTTTTCTAGTTTT TACTGTTATCTTTCTGCCACTTTCCATTTGTTCTCTTCCTCCTATTTTAC TTCTGATTTTACACCAATGTTAATAAGCAAAACATAAATACCATTATTCT CGACTAACAGCCACTAATCCTCACTTAATAAACCTTTCTACTTAATAATA TCAGATATAACTATTATGTCCAAATAATATAAATTACATACATAAAATAA ATCTGTGTGATAATATTATCTCATCTCTTTAACTCTCGAATAATAACTGT GTATTTTATCTAATTGCTTCTTAAGTAAGTCATTCTTTA	ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXTCATAGTTAGAATAGGCATTCCGAACAGA AGCTGTGGAGGCTCACATTGAATTTTACACTTTAAATATCAACTACATTT TATGCACTTATCCACCACCCAAACCAAAAAACTCATGACAGAATTAGAAC TAGAGAAACAGTTCACTTTCTATCCTCTTTCATAACTTGTGGCTATTACT TACAGTCAGTCCTTCTTTATGCCTTTTTATTTACTTATTCTTGTTTTCTT TTCTTCATGTCACAATGCACCCACCTGCGTAGATGATATACACAGGCACA CATAATCTTGGCCAGATACAGTACATGAGAAAGAAAAAGAATTCCTTTTC CTTCTGAAATTGCTCGGCTTTGCCTTAGTGTACTATTCCCTGACTCCATA CCTCTTTTATCTGCCCGAACATCTGATTCACAATCACATCCCCTACACTC TTTCTCACATTCTCATCTTCCCTCGACAACGATACACACACCCTCCCCCT TACCACTTACATTGACCTAGTGTCCCCTTTTAATAGAACCACTGGTAATT CCTATCTATGTCATACAATCTAACTTAGTATAACATTATGATAGTTAAAC TCCCTCCACTCTCTCTCGTTGTCTATCTGCATCTACTAACCGCTAATAAC TATTATACATCCCAACCTATACTATATAATCACATACACCAAA
quality values	Open. Hide. 6 6 6 6 15 23 29 30 29 25 28 24 17 17 10 10 10 19 17 13 12 8 10 8 12 12 19 10 10 11 18 11 11 12 14 11 11 11 11 11 13 19 18 27 30 33 33 33 33 36 33 50 50 50 47 23 22 13 13 8 8 8 8 9 10 19 19 28 21 24 26 24 26 28 48 59 38 42 42 42 34 31 34 34 28 28 34 34 39 39 48 42 48 48 42 37 37 48 46 40 32 20 20 20 20 29 31 42 41 41 41 41 46 47 57 57 47 47 35 35 35 35 42 42 48 48 54 57 57 57 41 42 41 41 41 36 37 30 30 37 37 42 42 47 47 50 50 50 50 57 37 37 35 37 37 50 50 47 57 57 57 42 42 28 28 28 43 44 57 57 57 57 57 43 37 32 43 32 32 32 36 33 24 24 24 12 12 19 32 42 44 44 48 46 44 39 39 39 37 36 25 25 25 23 32 32 32 32 24 21 13 12 12 16 19 28 31 25 22 20 20 27 27 32 39 42 46 43 34 31 31 29 24 24 15 15 11 16 18 31 37 39 37 30 13 8 8 8 8 8 9 12 16 15 16 16 16 15 9 8 8 8 8 10 16 28 32 31 35 31 21 12 10 9 9 10 13 11 6 6 8 10 12 15 15 13 12 12 26 15 16 15 15 11 9 7 6 6 8 8 10 10 25 34 30 37 28 23 24 31 31 31 32 23 29 28 30 28 31 26 24 20 18 15 12 12 14 14 17 19 24 25 39 39 39 24 22 12 12 12 19 28 23 11 9 9 11 17 21 37 37 39 39 39 36 31 33 22 23 15 13 13 21 21 29 33 33 31 23 16 14 11 12 16 21 16 12 16 18 23 18 12 9 10 8 8 8 8 8 8 8 8 8 6 6 8 10 21 16 14 14 15 12 8 8 8 8 8 8 9 9 14 14 12 15 11 16 12 9 9 8 12 10 10 8 8 8 8 10 10 13 16 19 10 8 8 8 8 10 9 9 9 9 9 12 12 12 16 13 17 23 23 21 18 10 8 8 8 11 11 12 12 17 17 8 10 8 6 6 7 7 9 9 10 11 11 10 13 8 9 8 8 6 6 8 8 8 8 8 8 8 8 10 12 10 8 8 8 8 13 13 14 9 11 11 11 11 16 13 13 12 10 11 11 8 8 10 10 8 8 8 10 10 11 10 8 8 6 6 8 8 10 8 8 8 12 11 9 9 10 10 11 12 13 11 11 15 18 10 8 8 6 6 8 8 8 8 8 11 8 8 10 8 10 10 12 10 9 9 9 9 10 12 15 15 12 13 10 10 10 8 8 8 8 8 8 8 8 8 11 11 11 11 11 11 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 9 13 13 10 10 8 8 8 8 8 8 17 16 14 11 11 10 9 9 9 9 8 8 15 10 10 10 10 10 10 8 8 10 8 10 8 10 10 10 10 10 15 8 8 8 8 8 8 9 10 8 8 8 6 6 8 8 8 8 10 6 6 8 8 8 8 8 10 7 6 8 8 8 8 8 7 6 8 8 12 12 11 11 12 11 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 10 8 8 8 8 8 10 9 9 9 9 9 9 9 8 8 6 6 8 8 8 10 8 8 8 8 8	Open. Hide. 7 7 7 6 6 8 8 10 10 9 9 9 19 19 20 24 28 39 33 28 22 22 22 25 34 25 19 12 8 6 6 7 8 9 9 10 10 10 11 11 18 11 14 19 19 15 9 10 10 23 19 23 12 11 11 11 8 8 8 9 12 22 14 15 15 13 16 24 19 19 8 8 8 13 10 20 20 31 31 33 23 23 30 30 21 18 15 14 21 31 31 37 39 39 29 29 29 24 26 24 25 28 25 29 24 28 28 24 19 24 19 16 16 24 24 33 33 37 37 41 41 41 23 19 8 6 6 8 21 21 30 41 46 41 47 59 37 28 30 28 24 26 20 20 23 32 31 36 39 39 39 42 42 28 28 29 42 42 47 40 27 19 14 14 14 24 29 39 37 37 36 37 30 30 30 30 30 37 37 37 37 39 44 44 47 42 42 35 32 32 30 30 37 30 30 12 12 12 18 18 18 27 27 21 30 15 21 18 19 24 25 28 42 42 33 35 35 43 43 48 48 48 48 48 48 47 43 43 27 30 17 17 17 27 27 42 30 36 23 23 28 36 37 37 43 43 43 43 43 39 30 23 14 14 14 14 19 28 23 23 23 32 32 43 37 37 28 25 25 25 25 29 37 32 28 23 23 23 23 23 19 21 14 12 12 12 12 18 18 11 8 8 6 6 8 8 17 24 29 28 20 20 20 18 18 22 18 15 10 11 9 9 14 16 17 13 19 17 12 12 12 12 12 11 11 11 12 12 8 8 6 6 8 8 8 10 13 10 10 9 9 9 9 9 9 10 15 12 15 12 12 12 15 11 13 13 16 18 20 20 20 19 19 15 15 14 14 14 15 15 15 22 12 12 12 13 10 10 10 9 13 10 9 9 12 12 14 14 12 12 8 8 8 8 10 19 13 12 10 10 10 9 12 12 10 10 10 10 13 9 10 8 8 8 8 8 10 12 12 9 9 11 11 11 11 9 9 11 9 8 8 6 6 8 8 8 8 8 8 10 8 8 8 7 7 7 10 8 9 10 16 15 12 11 11 8 8 8 8 8 8 8 8 9 9 9 8 8 10 8 8 6 6 8 8 10 11 11 12 15 13 8 8 8 8 8 8 9 9 8 10 8 8 8 8 9 15 12 9 9 10 10 8 8 8 8 9 9 11 8 8 8 8 8 8 8 10 8 7 7 8 8 8 8 8 8 8 9 9 9 10 10 10 11 10 10 8 10 10 10 8 8 8 10 8 8 8 8 6 6 8 8 8 6 8 8 8 8 8 8 8 8 6 6 8 8 8 6 6 8 8 8 8 10 12 18 12 12 11 11 10 9 9 8 8 7 7 11 10 8 8 8 8 9 9 9 9 9 10 8 8 8 8 8 8 8 7 9 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 6 8 10 9 9 9 9 8 6 6 6 10 10 10 8 8 8 8 7 9 8 8 8 8 8 8 10 12 8 8 8 8 8 6 6 8 8 13 8 8 8 8 8 8 10 10 10 8 8 6 6 8 8 8 6 8 8 8 8 8 8 8 11 8 8 10 10 10 9 16 11 11 11 8 8 10 8 8 8 10 10 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no081_j13.b1 MSMg01no081_j13.b1 CHROMAT_FILE:
MSMg01no081_j13.b1 PHD_FILE: MSMg01no081_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:51 2005
         (177 letters)



>mm_chr16_34462405_34462981
          Length = 577

 Score =  311 bits (161), Expect = 1e-89
 Identities = 173/177 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattttttgactgggttgttctatgcatactggttgtcaagcatccttagtgtgagcaa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ccattttttgactgggttgttctatgcatactggctgtcaagcatccttagtgtgagcaa 260

                                                                       
Query: 61  tctcatcagacttcacaggttagtgtacttttctgtatattatacatccaccagtaaaag 120
           |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 261 tctcatcagacttcacaggttagtgtacttttctgtatattacatatacaccagtaaaag 320

                                                                    
Query: 121 ttcataatatgcagaaaacataaacatataataaatttaaagaaataagcgtctgtg 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcataatatgcagaaaacataaacatataataaatttaaagaaataagcgtctgtg 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no081_j13.g1 MSMg01no081_j13.g1 CHROMAT_FILE:
MSMg01no081_j13.g1 PHD_FILE: MSMg01no081_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:51 2005
         (123 letters)



>mm_chr16_34632466_34632988
          Length = 523

 Score =  238 bits (123), Expect = 9e-68
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttagaataggcattccgaacagaagctgtggaggctcacattgaattttacactttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agttagaataggcattccgaacagaagctgtggaggctcacattgaattttacactttaa 264

                                                                       
Query: 61  atatcaactacattttatgcacttatccaccacccaaaccaaaaaactcatgacagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atatcaactacattttatgcacttatccaccacccaaaccaaaaaactcatgacagaatt 204

              
Query: 121 aga 123
           |||
Sbjct: 203 aga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information