BAC Information

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BAC

Clone NameMSMg01-081J22
Chromosome16 (Build37)
Map Location 4,219,907 - 4,220,016
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp
Downstream geneEG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081J22.T7 (MSMg01no081_j22.b1)MSMg01-081J22.TJ (MSMg01no081_j22.g1)
ACCAG302180AG302181
length724733
length of high quality
(start - end)
110 (120 - 229)98 (73 - 170)
definitionCHROMAT_FILE: MSMg01no081_j22.b1 PHD_FILE: MSMg01no081_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:53 2005CHROMAT_FILE: MSMg01no081_j22.g1 PHD_FILE: MSMg01no081_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTCCAAGAGGACCGCGGATTC
AGCTGTTCCCTAACTTGAGGATTCGGGTCTTCAGATGGCACAAACAGGAA
GATGGCTAGAAATACGCCCACACTGTGGATTCATGAGCAAATCCATTGCG
GGAAACCTGTGAAAAGTGTGTCTTGGTGGTTCTAGTTTACTCATTAATAT
AATAAACAAACTGTGGGCTGAATGTAAGAAAGGGGAAGGAGATGCTGGGG
TCTTCAGCTGAGGAGACTGAGTGGCCATGCACTTATAGGATTGTCCAGCA
GTCTGAGTGGCCCACTGCATATGAGTGACTATTGGTGATAAGGGTACCAG
GCAGCTCCCCACTCCCATTGATACAGGGTCCTGCTATGTAGCTGAAGACT
ATCTGGAAATCACTATGTAGCCAAGGCTCACAGCTATCCTCCTGCCTCAC
CTTCCCATCTGTTGGGATTACAGGAGTATACTGCCATACTCATACTATGA
ACAATATCATTTTTCTCAGTGCTCAGGCGTAAATTATCCAAATTTAACCT
CCAGTGTGTTTCTGTCATGCTAGTATAATCCCAATGAATGATGTAGAAAG
CATTTTATTCTATGACAAGACCTCTGCTTGTCATACCACACAATGAAATT
TACCCTTCTCCTGAAGGTCAACGAATATAATATTACGTACTAGACGACCC
TAAATCGCCCATGCATTGTAGATG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCATGCTGAAATTCACTGATGTCCTTT
GGGTCCATCATCCTGATGGCCTGTAAATTTATATCTAAGTGGGTATCATG
TTAGAAACATGTTTCTCAATGACTGCACAGGACCCAGACTCATGGACAGA
CCAGCAGGGACTAGCCTAGGAAGACCCCCACATTGACAGCTTCAGCATTG
GTGTAGGTTGAAAGTGATACCAAAGAGATATGCAGGGGCTGGCGAGATGG
CTCATTGGCCAAGAGCACCGACTGTTCTTCCTAAGGTCCGGAGTTCAAAT
CCCAGCAACCTCATGGTGCCTCACAATCATCTGTAACGAACTCTGATGCC
CTCTTCTGGAGTGTCTGACGACATTCTTCAGTGTACTTACATATACCAAA
TAATTAAATCTTTAAAAAAAAAAAGAAACATGCAAAGGCTCTGAACCAAG
AGCCTCTCTGTGTGACCGCTCGTTGCTAAGGACTAACTTGGTGATTACCC
TCGAGTGTACTCAAAAGAGATAAAGACATTACTCCATACGTCTCCCTGCA
ATCTATTCCTTGACTTGGATATCTCTTTACAGCATCTAGAATTATGCCTG
ATACAATGACACTCCTAAAATCCTGAAATCCTCCACACACAAAAATTAAT
TCACCCGTTCAAGCACGATCTCGCCACCGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_j22.b1 MSMg01no081_j22.b1 CHROMAT_FILE:
MSMg01no081_j22.b1 PHD_FILE: MSMg01no081_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:53 2005
         (110 letters)



>mm_chr16_4219707_4220216
          Length = 510

 Score =  197 bits (102), Expect = 1e-55
 Identities = 108/110 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acactgtggattcatgagcaaatccattgcgggaaacctgtgaaaagtgtgtcttggtgg 60
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 310 acactgtggattcatgagcaactacattgcgggaaacctgtgaaaagtgtgtcttggtgg 251

                                                             
Query: 61  ttctagtttactcattaatataataaacaaactgtgggctgaatgtaaga 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttctagtttactcattaatataataaacaaactgtgggctgaatgtaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)