BAC Information

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BAC

Clone NameMSMg01-083H02
Chromosome16 (Build37)
Map Location 17,558,110 - 17,558,324
singlet/doubletsinglet
Overlap gene4930451C15Rik
Upstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7
Downstream geneP2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083H02.T7 (MSMg01no083_h02.b1)MSMg01-083H02.TJ (MSMg01no083_h02.g1)
ACCAG303565AG303566
length759767
length of high quality
(start - end)
259 (43 - 301)215 (69 - 283)
definitionCHROMAT_FILE: MSMg01no083_h02.b1 PHD_FILE: MSMg01no083_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:10 2005CHROMAT_FILE: MSMg01no083_h02.g1 PHD_FILE: MSMg01no083_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTTGTATACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTG
CCTCCACGTGTGCCACCACGCCTGGCCCTGGGAGAATGTTTTGCTGAGAA
GAGACACGTGGTGTTTTTCTGGAAACAGCCTGGAAAAAGGGCATGTGCTG
TTTTGCTAGAGCAGGCGCTTGAGAGAACACAGGATGTTTGGGAAGGATAT
AAATATAGCTCAAAACAGAACCTGTTGGCTCACCTTGCCACTCTTGTGTT
CTGGTGGTTTCTTGCTGCTTCCACAGCCTCAGGCCAATTGGCAAAACCTC
AGAGTTTCTCCTGTATGAACTGCCATTGCTGACTCGCGAACGGCGCTCGT
GATGTATGCAGCTCTCGTGTTGATTCCTTGCGAATTTGACCTGATTGCCT
CCTGACTAATTTCGCCACTGTCCCTTTCTTTCTATTTCTAAACACCTCCT
CTATCCTCCCTCTGTCATCATCATCTCTTCCTCTTCTCCAACCTCTATTG
TTCATCTGCCACTACCTGTCATTTTATATATATTTTATTTTAAACTTTCT
TATATCTATACTCCACCTCTTCACTCCCACTCTCTCACTTACCACAACCT
ACCCCCCACTCACAATTATTATCTTTATTCTACTCTCACCCTAAAATATA
CAATACTATTACCACACCTCCTCTTAATCCCACCAATTCTCTCCTTACAA
TCCTCCTCA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGTGGCTGGAGTGGAAGGACAGCCAGAGGAGA
TATCATGAGCAGAAACCAGCACATTGATATTCTCAGGCAGAAGCTGGGTG
CCGTCCTGCCCATTCCCCTTCCCTGCCACCAGGGGGCGATAAGTACCCAT
GACTGCCCAGACTTTGTTACCTGCCAGGTCATTGAGCTGATTATAGCTGA
GGTCTAGAGATTTCAGGCCCCTGTGATGCAGCAGAAGAGTAGCGAGGTGC
TGGGCTGCTTGTTCCTCCAGCCTGCTCCCTTGCATCTGCTTCTTCTCAAC
AGTTGTTTTTAAAGCTAGGACATTGACAATAGACTGTAGCCCTGCTGCTC
CTATCTGAGTAGCCATACAATTGCAAAACTGATGTGATCATAACCGCCTG
GTTCTTAGAATTCTGCCTTCAGTTGTCCATTTATTGGCCGGGGTTGAGGA
CCCCCCGGGCAGTGCCCCTTACATTTTTATCTGTTATGAGGTGCTCCATT
AGCCGTGATATATTTTTTAACCTCCAGAGACGACGAAACCCCCTAATTCT
TTTTTTCCTCCTCTTTTTCCTTTTGTTTTTAAATAATATATCTTCTCTAC
TTCTGTGTATATTGTTATTTTTTTTTTTAATATCAATTTATTCTTTGTCT
ATTCTCTTTTCTTTTCTTTTCCTTTCCGCACTCTTTTATCCCTTCTTGCC
GTCTTTTGATACCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_h02.g1 MSMg01no083_h02.g1 CHROMAT_FILE:
MSMg01no083_h02.g1 PHD_FILE: MSMg01no083_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:10 2005
         (215 letters)



>mm_chr16_17557910_17558524
          Length = 615

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtggctggagtggaaggacagccagaggagatatcatgagcagaaaccagcacattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtggctggagtggaaggacagccagaggagatatcatgagcagaaaccagcacattgat 260

                                                                       
Query: 61  attctcaggcagaagctgggtgccgtcctgcccattccccttccctgccaccagggggcg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttcaggcagaagctgggtgccgtcctgcccattccccttccctgccaccagggggcg 320

                                                                       
Query: 121 ataagtacccatgactgcccagactttgttacctgccaggtcattgagctgattatagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagtacccatgactgcccagactttgttacctgccaggtcattgagctgattatagct 380

                                              
Query: 181 gaggtctagagatttcaggcccctgtgatgcagca 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtctagagatttcaggcccctgtgatgcagca 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)