BAC Information

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BAC

Clone NameMSMg01-084D03
Chromosome16 (Build37)
Map Location 33,420,030 - 33,420,440
singlet/doubletsinglet
Overlap geneZfp148
Upstream gene0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791, Osbpl11, Snx4
Downstream geneSlc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D03.T7 (MSMg01no084_d03.b1)MSMg01-084D03.TJ (MSMg01no084_d03.g1)
ACCAG304119AG304120
length702698
length of high quality
(start - end)
522 (44 - 565)411 (73 - 483)
definitionCHROMAT_FILE: MSMg01no084_d03.b1 PHD_FILE: MSMg01no084_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:09 2005CHROMAT_FILE: MSMg01no084_d03.g1 PHD_FILE: MSMg01no084_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATACTCATTTACAAATGGATCTATAAAGATGCAATATCTGATGACT
TTATTATCTTTACTGAAAAAAAAAAATGAGCTAGGGCCTGGGATATAGCT
CAGCTAGTAGAGTGTTTGCCTAGCACACAGAAGGCAGTGGGTTTGATCCC
TAATACTATATAAATGAAGTGTGGTGGTGTATACTTGTAGTCTCAGCACC
GGGGAGGTATACAGCCAAGACCAGAAATTCTGAGTTATTCTCAACCACAA
AGAGAATTCAAGGCCAGGGAAGGATACACAAAAGCCCATCTAAAGCAAAA
ATGGACGTTCACTGCCATAGGTGAGAGCTGCTCTCAGCCCTGGTCACAGA
CCCTTCTGTTTGCAGCTACACGAGTTAATGTAAAGACCCAGAAACTGGAG
TCCTCACCCCTAAATAGGATGCCTATATCACCCCTCCAGAGTCCAGGGGA
CACAGGCATCAATGCTATGCTGTACCTTCCTGGAACCATATGGCTATTGT
ACCCATTTATTCACAGCATCTATGCTACCTGCTCCAGACTTCCACGAAAC
TGTACCTATGATAGCACTCAATCATGGATGGGGAGATCTTCCATAAGGCC
CCACCACTTTCTGAGACTATAGGTCCTTAGCGGTTACTTGCGCAGTGAGT
CC
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCTTTTAGTTTTCATAGCATTTGTTTC
ATATACCTGGAAAAATATCCCAGTTAATATAAAAGAAGTGGATCTGTGTC
CTGTATCATTATAATGCAATCTGAATGGTAATTTTCTTAGTTTTTTGCTG
AGGTTGATTTACTATATATAAATTAAAATCATCCATAGATTGTTTTGACA
TTATTAAATCTTTTTTGCCTTACAATTAAAAAATATATATTTTTTTATTT
TCTTTTTCTCTTTAAAGATTTATTTATTATATGTGAGTACACTGTAGCTG
TCTTCAGACACACCAGAAGTGTTCTTAACCACTGAGCCATCCGTCCAGCC
CCTATTTTTTACTTTCACAATCTACATTCAACTGTTTTGGGGATTAAGGG
AAAGAGGATGTGAGTAACCAAAGTCTCATGTAGCTTGGGATGTCCTTGAA
CTTGTTATGCTCTCAAAGATGATCTTGAATTTTGATCTCTTGCCGACTCC
TCAAGTTTGGAGCTATAAAAAGTTACTGCCATACTATGCTTTTACAGCCC
TGAGTATTGAACCCAGTGCCTCATGGATGTTAGGTCCATTCACAACTACC
TGTCTCTCCTTCCCTCCCCAGTAAGGATCTTGCTGTGCATTTTTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d03.g1 MSMg01no084_d03.g1 CHROMAT_FILE:
MSMg01no084_d03.g1 PHD_FILE: MSMg01no084_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:10 2005
         (411 letters)



>mm_chr16_33419830_33420642
          Length = 813

 Score =  721 bits (373), Expect = 0.0
 Identities = 402/415 (96%), Gaps = 8/415 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttttagttttcatagcatttgtttcatatacctggaaaaatatcccagttaatataa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 201 agcttttagttttcatagcatttgtttcatatacctggaaaaatatcccagttaatagga 260

                                                                       
Query: 61  aagaagtggatctgtgtcctgtatcattataatgcaatctgaatggtaattttcttagtt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaatggatctgtgtcctgtatcattataatgcaatctgaatggtaattttcttagtt 320

                                                                       
Query: 121 ttttgct--gaggttgatttactatatataaattaaaatcatccatagattgttttgaca 178
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgctaagaggttgatttactatatataaattaaaatcatccatagattgttttgaca 380

                                                                       
Query: 179 ttattaaatcttttttgccttacaattaaaaaatatatattttttt--attttctttttc 236
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 381 ttattaaatcttttttgccttacaattaaaaaatatatatttttttttattttctttttc 440

                                                                       
Query: 237 tctttaaagatttatttattatatgtgagtacactgtagctgtcttcagacacaccagaa 296
           ||||||||||||||||    ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tctttaaagatttatt----atatgtgagtacactgtagctgtcttcagacactccagaa 496

                                                                       
Query: 297 gtgttcttaaccactgagccatccgtccagcccctattttttactttcacaatctacatt 356
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctgttcttaaccactgagccatccgtccagcccctattttttactttcacaatctacatt 556

                                                                  
Query: 357 caactgttttggggattaagggaaagaggatgtgagtaaccaaagtctcatgtag 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caactgttttggggattaagggaaagaggatgtgagtaaccaaagtctcatgtag 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 813
Length adjustment: 9
Effective length of query: 402
Effective length of database: 804
Effective search space:   323208
Effective search space used:   323208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)