Query= MSMg01no084_d15.b1 MSMg01no084_d15.b1 CHROMAT_FILE:
MSMg01no084_d15.b1 PHD_FILE: MSMg01no084_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:12 2005
(627 letters)
>mm_chr16_55555795_55556821
Length = 1027
Score = 1197 bits (619), Expect = 0.0
Identities = 622/623 (99%)
Strand = Plus / Plus
Query: 5 gaattcctactcctactctgtccgtcagggtctgcaaggataattagcactctccctccg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctactcctactctgtccgtcagggtctgcaaggataattagcactctccctccg 264
Query: 65 tatattcctctgcacatggcttttggaacataagtcatgagacccattctcttgatagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatattcctctgcacatggcttttggaacataagtcatgagacccattctcttgatagtg 324
Query: 125 tgtaaatcctttaatggcaaaagtggtatttaattcatctgagaattctcagccccggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaaatcctttaatggcaaaagtggtatttaattcatctgagaattctcagccccggct 384
Query: 185 ctagacctggctcttaggggtcagccaccactcgtggtaagtttgaagtcaatgaaaacg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagacctggctcttaggggtcagccaccactcgtggtaagtttgaagtcaatgaaaacg 444
Query: 245 tactcagatgtgatgtttcccagagctgcaaaaggagccattgtgaaagaagacacacgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactcagatgtgatgtttcccagagctgcaaaaggagccattgtgaaagaagacacacgg 504
Query: 305 ccacgcatgttcctattgaattcaacttttcaaattgcacaaaatactggagaggaaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccacgcatgttcctattgaattcaacttttcaaattgcacaaaatactggagaggaaaaa 564
Query: 365 aaagccagtgattctaggtaaacactcgggagtaccagtgcccaggctggcaattcaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagccagtgattctaggtaaacactcgggagtaccagtgcccaggctggcaattcaaat 624
Query: 425 gcttacagagaagccgaagcagctccaaacaaaggttgctattagcaacagaaaatgcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttacagagaagccgaagcagctccaaacaaaggttgctattagcaacagaaaatgcag 684
Query: 485 ccagcaacatcagcttcaggaagaaaaagtaggcaaagatcgggctctaagaaagatggc 544
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctagcaacatcagcttcaggaagaaaaagtaggcaaagatcgggctctaagaaagatggc 744
Query: 545 cataatgccaaggatgaaatatgcagtacaaaattgtctagcattcattttgctttatat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cataatgccaaggatgaaatatgcagtacaaaattgtctagcattcattttgctttatat 804
Query: 605 tttttccatcaaggaaaagaatg 627
|||||||||||||||||||||||
Sbjct: 805 tttttccatcaaggaaaagaatg 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_d15.g1 MSMg01no084_d15.g1 CHROMAT_FILE:
MSMg01no084_d15.g1 PHD_FILE: MSMg01no084_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:12 2005
(600 letters)
>mm_chr16_55616747_55617746
Length = 1000
Score = 1125 bits (582), Expect = 0.0
Identities = 597/602 (99%), Gaps = 3/602 (0%)
Strand = Plus / Minus
Query: 1 ctggggtatgaaactcagataacagctggtaaatggttgaagcaactgcaggcttgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 ctggggtatgaaactcagataacagctggtaaatggttgaagcaactgcaggcttgaatt 885
Query: 61 tgataggttaagatgaaatgaactgatg-aaaaaaaaaac-aaaaaaacaaaaaacaaaa 118
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 884 tgataggttaagatgaaatgaactgatgaaaaaaaaaaacaaaaaaaacaaaaaacaaaa 825
Query: 119 acaaaaacaaaaaccaaaaacaaaaaaaaccccaaaaccccaaatacaagaaaccaaacc 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 824 acaaaaacaaaaaccaaaaac-aaaaaaaccccaaaaccccaaatacaagaaaccaaacc 766
Query: 179 ccaaaccccacaacttctagagcagcactgatccactgaataagatgcaagccatatatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ccaaaccccacaacttctagagcagcactgatccactgaataagatgcaagccatatatg 706
Query: 239 tgattttgaactttgtagtggccacatttaaaaaggagaccaatcttaatcattttaaac 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 705 tgattttgaactttgtagtggccacatttaaaaaggagatcaatcttaatcattttaaac 646
Query: 299 atagatttaaccatatttcaaacatgtagtagtcttgtaggcatatagaacagtctagaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 atagatttaaccatatttcaaacatgtagtagtcttgtaggcatatagaacagtctagaa 586
Query: 359 tatatgtaaccaaccagagaaagacatttttatgttttaaaagtagaatgagttttcata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tatatgtaaccaaccagagaaagacatttttatgttttaaaagtagaatgagttttcata 526
Query: 419 gcaattaagtccatttaataatgctaaaactccaagaggaagttcttttttttattagat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcaattaagtccatttaataatgctaaaactccaagaggaagttcttttttttattagat 466
Query: 479 attttcttcatttacatttcatatgctatcctgagagtcccctgtaccctcccccagccc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 attttcttcatttacatttcatatgctatcctgagagtcccctgtaccctcccccagccc 406
Query: 539 tgttccccaacccacccactcctgcttcctcgccctggcattcaagaggaagttctttag 598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 405 tgttccccaacccacccactcctgcttcctggccctggcattcaagaggaagttctttag 346
Query: 599 tg 600
||
Sbjct: 345 tg 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
