ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCGGAGTTTCCTCCACTAACAAGAAAGCTTCCAGGGCTAGCCCACCA
ATGCTTTACTGGCTGGTCTCAAACCCACAACCAAGGAGATACATACTTGT
GTGCAACACTGCAGTCTGGTTGGTGCTGAAGGACTTGTTTCTATTTGGGT
GTGATGCACTCTTTTCTCTGTCTGTTTCTCTCTGCTCCCGCCTATGAGTG
ACCCAGAGGCTCTCCTCTGTCCATCAAATGGTTCTCTGGTTTCCAGGTAG
TCAGGGGAGGAGGGAGTTTGCTTCCTTATGGGGAACGGCATTGGGGCTTG
CTGAAGCTGAGAGGTATCTGGGCGGCTGCCAGAGGGGTTGACCTGGGAGC
AGTGAGGGGAAAGCTGTCCCCGTGGTCAAGGAGCTCCTGGCAGAGATCTG
AAGGGCCTGTAGACGGGGCCATGTGGTAGGTGGAAGTAGCTGTTTCCATT
CTCTGTGTGGGCTGTTTGTTATACCCAGAAACAAAGTAGTCCCGGCTGGC
TTGAGGGTTGGTCGCGCAGCTTGCTCTGGGCTTAATGCCTTCTCCCCATC
TTTTGCTTCTTCCAATTTCAATCTGGCAGTCCAAGTTGGGGGCGCCTCTC
TATGCTCAAGCCCCTCACGTGGCTGTTCTGTCCTCACAATCCCCTCAACA
AAA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCTGTAGATCAGGCTGGCCTTGAACTTC
CTGCACAGCTGAGACTACCCTTGGGCTTCAGCTTTTCCTGCCTCTGCCTC
CTGAATACAGCGTTGTTGTAATTATTTTAGAAGTGTTCCTATTGACAGGA
CAGTGGATTGGACCTGAGCATCGGGCACCCCTCACTCCAGCAACCCTGAT
GCCCTCACACTAGAGAAGCCAAATCTACCTTTTTTCCCCTGGGCATCTGC
TTTCCCTCCCCTCCTCTGGTTCTTTGCCCCACTTCCCTCCCCTTCTACTT
CTTCATTTAAGGTGGAGTCTCAAGTAGTCTGGGCTAGTCTCAAATTACCT
TTGTAACCAAGGATGATCTTGACCTACTGATCTGTACCTTCCAGGTGCTA
GAATTACAGGCGTGTATGACCACACCCAGTTCTGTACAGTCCTGTAGTTC
ATATCCAGGGCTTGATGCTACCTAGCAAGCACTGTGTCGGTAGAGCTACA
TCCCCTGTCCTCTCCTCTGTTATTTAAAGAATTGATTTCCTATTCCTCAT
CACACTGGGTGATGCATGAGCCTCTTGAACAGTAAGTTTGATGTCACTGG
CGATCACCGCCAAGTATGTTACATTCACATTGATAAACC

Query= MSMg01no084_o02.b1 MSMg01no084_o02.b1 CHROMAT_FILE:
MSMg01no084_o02.b1 PHD_FILE: MSMg01no084_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:01 2005
         (509 letters)



>mm_chr16_38706540_38707448
          Length = 909

 Score =  971 bits (502), Expect = 0.0
 Identities = 505/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcggagtttcctccactaacaagaaagcttccagggctagcccaccaatgctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcggagtttcctccactaacaagaaagcttccagggctagcccaccaatgctt 263

                                                                       
Query: 64  tactggctggtctcaaacccacaaccaaggagatacatacttgtgtgcaacactgcagtc 123
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactggctggcctcaaacccacaaccaaggagatacatacttgtgtgcaacactgcagtc 323

                                                                       
Query: 124 tggttggtgctgaaggacttgtttctatttgggtgtgatgcactcttttctctgtctgtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggttggtgctgaaggacttgtttctatttgggtgtgatgcactcttttctctgtctgtt 383

                                                                       
Query: 184 tctctctgctcccgcctatgagtgacccagaggctctcctctgtccatcaaatggttctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctctctgctcccgcctatgagtgacccagaggctctcctctgtccatcaaatggttctc 443

                                                                       
Query: 244 tggtttccaggtagtcaggggaggagggagtttgcttccttatggggaacggcattgggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggtttccaggtagtcaggggaggagggagtttgcttccttatggggaacggcattgggg 503

                                                                       
Query: 304 cttgctgaagctgagaggtatctgggcggctgccagaggggttgacctgggagcagtgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttgctgaagctgagaggtatctgggcggctgccagaggggttgacctgggagcagtgag 563

                                                                       
Query: 364 gggaaagctgtccccgtggtcaaggagctcctggcagagatctgaagggcctgtagacgg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gggaaagctgtccccgtggtcaaggagctcctggcagagatctgaagggcctgtagacgg 623

                                                                       
Query: 424 ggccatgtggtaggtggaagtagctgtttccattctctgtgtgggctgtttgttataccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggccatgtggtaggtggaagtagctgtttccattctctgtgtgggctgtttgttataccc 683

                                     
Query: 484 agaaacaaagtagtcccggctggctt 509
           ||||||||||||||||||||||||||
Sbjct: 684 agaaacaaagtagtcccggctggctt 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no084_o02.g1 MSMg01no084_o02.g1 CHROMAT_FILE:
MSMg01no084_o02.g1 PHD_FILE: MSMg01no084_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:02 2005
         (390 letters)



>mm_chr16_38809475_38810264
          Length = 790

 Score =  746 bits (386), Expect = 0.0
 Identities = 389/390 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgtagatcaggctggccttgaacttcctgcacagctgagactacccttgggcttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctctgtagatcaggctggccttgaacttcctgcacagctgagactacccttgggcttcag 505

                                                                       
Query: 61  cttttcctgcctctgcctcctgaatacagcgttgttgtaattattttagaagtgttccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttttcctgcctctgcctcctgaatacagcgttgttgtaattattttagaagtgttccta 445

                                                                       
Query: 121 ttgacaggacagtggattggacctgagcatcgggcacccctcactccagcaaccctgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgacaggacagtggattggacctgagcatcgggcacccctcactccagcaaccctgatg 385

                                                                       
Query: 181 ccctcacactagagaagccaaatctaccttttttcccctgggcatctgctttccctcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccctcacactagagaagccaaatctaccttttttcccctgggcatctgctttccctcccc 325

                                                                       
Query: 241 tcctctggttctttgccccacttccctccccttctacttcttcatttaaggtggagtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctctggttctttgccccacttccctccccttctacttcttcatttaaggtggagtctc 265

                                                                       
Query: 301 aagtagtctgggctagtctcaaattacctttgtaaccaaggatgatcttgacctactgat 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 aagtagtctgggctagtctcaaattagctttgtaaccaaggatgatcttgacctactgat 205

                                         
Query: 361 ctgtaccttccaggtgctagaattacaggc 390
           ||||||||||||||||||||||||||||||
Sbjct: 204 ctgtaccttccaggtgctagaattacaggc 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)