BAC Information

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BAC

Clone NameMSMg01-084P12
Chromosome16 (Build37)
Map Location 84,918,920 - 84,919,468
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311
Downstream geneApp, Cyyr1, LOC100039994, LOC622000, Adamts1, Adamts5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P12.T7 (MSMg01no084_p12.b1)MSMg01-084P12.TJ (MSMg01no084_p12.g1)
ACCAG304680AG304681
length730709
length of high quality
(start - end)
668 (45 - 712)553 (55 - 607)
definitionCHROMAT_FILE: MSMg01no084_p12.b1 PHD_FILE: MSMg01no084_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:08 2005CHROMAT_FILE: MSMg01no084_p12.g1 PHD_FILE: MSMg01no084_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGAATCCGCGGAA
TTCTCAATTCTGTACATCTATGCTCCAAATGCAAGGGCAGCCACATTCAT
TAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCAGCTCGCACAGTAA
TAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGACCATGGAAA
CAGAAACTAAACAGAGACACAGTGAAACTACCAGAAGTTATGAAACAATT
GGATTTAACAGATATCTACAAAACATTTTAACCTAAAACAAAAGGATATA
CCTTCTTCTCAGCACCTCATGGCACCTTCTCCAAAATTGACAATATAATG
GTCACAAAACAGGTCTCAAAAGATACAAAAATATTGAAATTGTCCCATGC
ATCCTATCAGATCACCATGCACTAAGGATGATCTTCAATAACAACATAAA
TAATAGAAATACAACATTCACTTGGAAACTGAACAACACTCTTCTCAATA
ATACCTTGGTCAAGGAAAGAATAAAGAAAGAAATTAAAGACTTTTTAGAG
TTTAATGAAAATGAAGCCACAACATACCCAAACCTTTGGGACACAATGAA
AGCATTTCTAAGAGGGAAACACATAGCTCTGAGTGCCTCCAAAAAGAAAC
TAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAA
CAAAAGGAAGCAAATTCACCCAAGAGGAGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAATTGGGAGATTGGGGAGGAGTGAGAAACCCGCACAAATAAAATCA
GAAATATGAGCAAAACATAACAGTGTTTAAACCATCACACAGTGCCAACA
CCTAGTGAAATGAGAACACTCACTCATCTGGGGCAAGATGAAGGATGATT
CTTGAGACAGGAAATGGATTTTGAAGAAAGATTGAATTGGAGTGGGAAGG
GGTGAATTTATGAAGACCTTATTTCATGAGTGAGAGAGAGAAAAATGAGC
AAAATATAAATAGGATAGACCCAGGAATAGAAAACAGAACATGATGGAGT
CTGCTTTGTACCTTAATATTATTACATCATTCAGAACCCATTCGAGAGTG
AGGATTCACACCTGCTAATTTAACAGAAGGGAAATCATTTGAAAAAGAAT
AGCCTACATATAAAGTTATGAAATGGTGCATAGGAAGGTAATGTAGTACT
GCAATGGATTGCAGCTTAAGGGGGAAAAAAAGGAGTTTACAAATTTAAAA
GTCGTTTTATTAACTTTCACAATGTTACCTCCATCTTAAATGTTTTCTGT
GTCTGTGTGTCTGCCCTTTTATTCACTCCTTTGCCACTTCTTATGGGGGC
TTAAGGTCAAGAGTGAAGCCATGTGGGTTATGGTACTGCCTCCCACAGAT
TATAAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p12.g1 MSMg01no084_p12.g1 CHROMAT_FILE:
MSMg01no084_p12.g1 PHD_FILE: MSMg01no084_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:08 2005
         (553 letters)



>mm_chr16_84918720_84919672
          Length = 953

 Score =  980 bits (507), Expect = 0.0
 Identities = 540/551 (98%), Gaps = 4/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgggagattggggaggagtgagaaacccgcacaaataaaatcagaaatatgagcaaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aattgggaggttggggaggagtgagaaacccgcacaaataaaatcagaaatatgagcaaa 690

                                                                       
Query: 61  acataacagtgtttaaaccatcacacagtgccaacacctagtgaaatgagaacactcact 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 689 acataacagtgtttaaaccaacacacagtgccaacacctagtgaaatgagaacactcact 630

                                                                       
Query: 121 catctggggcaagatgaaggatgattcttgagacaggaaatggattttgaagaaagattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 catctggggcaagatgaaggatgattcttgagacaggaaatggattttgaagaaagattg 570

                                                                       
Query: 181 aattggagtgggaaggggtgaatttatgaagacct-tatttcatgagtgagagagagaaa 239
           |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 569 aattggagtgggaaggggtggatttatgaaga-ctgtatttcatgagtgagagagagaaa 511

                                                                       
Query: 240 aatgagcaaaatataaataggatagacccaggaatagaaaacagaacatgatggagtctg 299
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatgagcaaaaaataaataggatagacccaggaatagaaaacagaacatgatggagtctg 451

                                                                       
Query: 300 ctttgtaccttaatattattacatcattcagaacccattcgagagtgaggattcacacct 359
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caatgtaccttaatattattacatcattcagaacccattcgagagtgaggattcacacct 391

                                                                       
Query: 360 gctaatttaacagaagggaaatcatttgaaaaagaatagcctacatataaagttatgaaa 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 390 gctaatttaacagaagggaaataatttgaaaaagaatagcctacatataaagttatgaaa 331

                                                                       
Query: 420 tggtgcataggaaggtaatgtagtactgcaatggattgcagcttaagggggaaaaaaagg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tggtgcataggaaggtaatgtagtactgcaatggattgcagcttaagggggaaaaaaagg 271

                                                                       
Query: 480 agtttacaaatttaaaagtcgttttattaactttcacaatgttacctccatcttaaa-tg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 270 agtttacaaatttaaaagtcgttttattaactttcacaatgttacctccatcttaaaat- 212

                      
Query: 539 ttttctgtgtc 549
           |||||||||||
Sbjct: 211 ttttctgtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)