BAC Information

Click to search

BAC

Clone NameMSMg01-085D07
Chromosome16 (Build37)
Map Location 79,056,556 - 79,192,138
singlet/doubletdoublet
Overlap genePrss7
Upstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085D07.T7 (MSMg01no085_d07.b1)MSMg01-085D07.TJ (MSMg01no085_d07.g1)
ACCAG304857AG304858
length1,1201,211
length of high quality
(start - end)		277 (53 - 329)336 (111 - 446)
definitionCHROMAT_FILE: MSMg01no085_d07.b1 PHD_FILE: MSMg01no085_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:39 2005CHROMAT_FILE: MSMg01no085_d07.g1 PHD_FILE: MSMg01no085_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,191,862 - 79,192,138)(79,056,556 - 79,056,891)
sequence
CCTATAAAGCCCAAGTAAGGCAGAAATCTATATTTTTTGCCTTATAACAT
ACCTACATTTTCTACAATTTATGTAAAGGGAAAATTTTTAATCAAGTTTC
AACAATTGTTGGGGAATTTTATTTCTTACAACAAATTTTACCTCTCTTTG
AGTAAATAGTAGTTAAACTAAAAACGGTGTTAACACTGTGAGGTGTCTCA
TGAAGTAATGTCTCAGCCTTCTCTTAGCAATGCTACAATCATACACTGTC
TTTTTAGTCATATAAGTTATGCTGGGAACTGGGATTCACAAGTAAATGCA
TTTTTCTTCCAATATTTCCAACATAACGACTTTTTGTATCCACGAAAGCG
GGCAGGCACCATACTCAGCAGCACGTGCAGGTTAGGTCTTGCCTTCTAAT
TTGATTTAATTAACTTGATCCACAAATATGCCCATGTCAACTGCCCAGTT
TCACTTAATGCTTTTTCTCTCTATTTGGTCTTCTGGATTCTTCAGTGTTA
CATCCTCTCTCTTATTGATAAGTGCTACAGGTCCCTTTAAACCTCTTTAT
TGTCCTCTAGGATATAATTTCACGTTAATTTATTCTCTTGCAATTTGTCA
TATTCCTCCTGGTATCTTGCACTCTCGGATAATTAATGTTCCAATGCTTT
TTGCTTAATTTTTTCTGTTTTTTGTCTGTTTTCTTTTATTATTCTTTCAT
TTTTTTTTTTTTTTTAATTTTATTTCTTTTCTTTATACCTCTTTTTTCTC
TACTTTATTCTTTTCTTCTTCTTTTTTTTTTTCTTTCTTTATTTTCTTTC
TTTTTTCTTCTTTTTTTTCTTTTTTTTTTATTTCTTCCTTTTTTTTTTTT
TTTATTTTTTTTTTATTAATTTATTTATATTTTATTTCTTTTATATTTAT
TGTCACTATATTCTTATTTTCTTTTTTTTTTTTTTCTTTCTTCTTCTTTT
CTTTCTTATCTTTTATTTTTCTTTTTTATTTTTTATTCATTTCATTCTAT
CCTTTATCCCTATTATTCTTTATATTCATATTTTTCTTTCATATTTATTT
TCTTTTACTAATTTCATCTTTTATACTCCTTACTTTCATTTACATGTTCT
CTTTTACTTTTCCTATTCTT

ATATGGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCTTCATCTGATGCGGGTTTGACATTATATTTCACAT
GAACTTAAGAGAAGCATGCTTGGAGCTGTTTGTTTATTGACCTCTGCCTT
TTGGAGGAAGAACCAGGGAACAGAGGAGAAGAACAATCCCATTTGGTTCT
TTGCTACATTTTGGACCAGAAGCTCTAACTCACAGTAAAGAGAAACACAG
GTACATCTATGAGATGGGGAACAACCCTTCTTCTATTTTAAACCTCTCAT
TGGTTATCCAATTCAGGGTGGTAAGCCTTTGCACAACAACACAAACAACA
AAAATGAACTCAGTTTTATTCTGTGACAATAATGATCATAGAAAATGTGG
CGTCCAATTGAGATGTCATGAGTGAGGAGATGGGAGGGATAGGATGGCGA
ATAAGGTAGAGTGCTTCTTTATCTTTTTTTTTCTTTTTCTTTTTTTCTTT
TTTTCTTCTTTTTCTTTTTCATCTAATTCCTGTCTTTCTTTTTTCTATCT
TTTTCTTTTTGTTTTTCCGTTTTTATTTACCTTTTTTTTTTCTCATTTTA
TTCTCTTTTTTTTTTTTTTTTCCCTTTTTTTCCTTTTCTTTTTTCTTTCT
TATTCTTTTCTCTCCTTTTTTCTCTTTCTTTTTTTTTCTCCCTTTTTTCT
TCTTTTTTTTTCCTATATATTTCTTTTCTTTCCTTTTTCCCTTTTTTATT
CTTTCTTTCTTTTCTTTTTCTTCCCTTTTTTTTTTTTTTCTTCTATTTTT
TCTTATCTTTTTTTTTCTCTTTTTTCTTTTTTTTTCCCTCTTTTTTTTTT
TTCTCATCTTCCTTATTACTTTTTTTTTTTTTTTTTTTTCCCTTTTTTCC
TTTTCTACTTATCTTCTTCTCTTCTTATTCTCTCTTTTTATTTTTTCTTC
TTTCTTTTTTTTTTTCTTTTTCTTCTTCTTTCCCTTTTTCTTTGTTTATC
TTTTTTAATACTTCCTTCTTTTCTCTTCTCCTCTTCTTTTATTCTCTTTC
CCTTATTTTCTCTCATCTTCCTTTCCTATTCTTTCTTTTTTCAATATTTT
CTTCTTTTTCTTCTTTCTCTCATTTCCCCTTTATTTCCTTTCTCATTTTC
TCCCCCTTACTCTCTTATTTTCTTTTTCATTCTCTTAGTACACTTCTTTT
TCATCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_d07.b1 MSMg01no085_d07.b1 CHROMAT_FILE:
MSMg01no085_d07.b1 PHD_FILE: MSMg01no085_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:39 2005
         (277 letters)



>mm_chr16_79191662_79192338
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacattttctacaatttatgtaaagggaaaatttttaatcaagtttcaacaattgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ctacattttctacaatttatgtaaagggaaaatttttaatcaagtttcaacaattgttgg 418

                                                                       
Query: 61  ggaattttatttcttacaacaaattttacctctctttgagtaaatagtagttaaactaaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 417 ggaattttatttcttacaacaaattttacctttctttgagtaaatagtagttaaactaaa 358

                                                                       
Query: 121 aacggtgttaacactgtgaggtgtctcatgaagtaatgtctcagccttctcttagcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aacggtgttaacactgtgaggtgtctcatgaagtaatgtctcagccttctcttagcaatg 298

                                                                       
Query: 181 ctacaatcatacactgtctttttagtcatataagttatgctgggaactgggattcacaag 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctaaaatcatacactgtctttttagtcatataagttatgctgggaactgggattcacaag 238

                                                
Query: 241 taaatgcatttttcttccaatatttccaacataacga 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 taaatgcatttttcttccaatatttccaacataacga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no085_d07.g1 MSMg01no085_d07.g1 CHROMAT_FILE:
MSMg01no085_d07.g1 PHD_FILE: MSMg01no085_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:39 2005
         (336 letters)



>mm_chr16_79056356_79057091
          Length = 736

 Score =  627 bits (324), Expect = 0.0
 Identities = 333/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcatgcttggagctgtttgtttattgacctctgccttttggaggaagaaccagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcatgcttggagctgtttgtttattgacctctgccttttggaggaagaaccagggaa 260

                                                                       
Query: 61  cagaggagaagaacaatcccatttggttctttgctacattttggaccagaagctctaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggagaagaacaatcccatttggttctttgctacattttggaccagaagctctaact 320

                                                                       
Query: 121 cacagtaaagagaaacacaggtacatctatgagatggggaacaacccttcttctatttta 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cacagtaaagagaaacacaggtacatctatgagatggggaataacccttcttctatttta 380

                                                                       
Query: 181 aacctctcattggttatccaattcagggtggtaagcctttgcacaacaacacaaacaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctctcattggttatccaattcagggtggtaagcctttgcacaacaacacaaacaaca 440

                                                                       
Query: 241 aaaatgaactcagttttattctgtgacaataatgatcatagaaaatgtggcgtccaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 aaaatgaactcagttttattctgtgacaataatgatcatagaaaaagtggcgtccaattg 500

                                               
Query: 301 agatgtcatgagtgaggagatgggagggataggatg 336
           ||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agacgtcatgagtgaggagatgggagggataggatg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |