BAC Information

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BAC

Clone NameMSMg01-087N14
Chromosome16 (Build37)
Map Location 3,644,840 - 3,644,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042177, LOC100042915, LOC100042188, LOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949
Downstream geneMefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087N14.T7 (MSMg01no087_n14.b1)MSMg01-087N14.TJ (MSMg01no087_n14.g1)
ACCAG306759AG306760
length716759
length of high quality
(start - end)
369 (21 - 389)151 (132 - 282)
definitionCHROMAT_FILE: MSMg01no087_n14.b1 PHD_FILE: MSMg01no087_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:07 2005CHROMAT_FILE: MSMg01no087_n14.g1 PHD_FILE: MSMg01no087_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AGCTCCTATAGTGCGAGGATCCGCGGAATTCTTTTGGCTTTTTTGAGTTA
TTAGTTTTCTATTGGATGTGGAGTAGATAAAAACATTTCCCCAGTACATA
GGCTGCTGTTTTCTGTCTTATTAATAGTGTCCTTGCCTTATAAAAGCTTT
TCAGTTTCACAAGGTCCCACTTATTAATTGTTGATATTAGTGTCTGTGCT
ATAGGTGTTTATTTAGGCACTTAACCCCTGTGCTGATGTATTTAGGCTAT
ACCCTACTTTCTTTTCTGTCAGGTTCAGGGTATCTGGACTTATGTTGAGT
TCTTTCTCTATGTGAATTTGAGTTTTTTCTGGGCAATAAATAGATCTATT
TACATTCTTCTATATATAGATATAGAATTTGATAAGCATAATTTCGCCGA
ATATGCTTTTATAATGGACTTTTGGCTACTTTTAAAAAATGTACGGCGTT
TGCACTTACATTTGGGTCTACACCCATATTTTTAGATTATAGTTCAACAA
TGATTCTACTGAGTAGCTGTGATGCACCATCATAGTCTAATTTAATATGT
CCAAATGAATACCACCAAATTGAGGCTTATAAAAACGTATTTCTCTATAT
ATATTGCACATTAGTCCCCTGTCCGAATTGTTATAGCAAAGAATCTTTCC
CAATCTGCCGTCGGTCTTTTTGCCTTATTGACGGTGTCTTTCGGCCCGAT
AAAGCTTTGTTATTTT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGCTGAGGATGTAATGGACAGGACAA
GTTAAGCTGAGGGTGTCATGTATCCCCACAAGTGACACTGAGGGTGTCAT
GGATAGGACAAGTCTCACTGAGGGTGCCTGCATCACACTGAGAGTTTCTC
CATCATGCTGAGGGTGTCATGAAGAGGACAAATAATGCTGAGGGTTTCAT
GTACAGGACATGTCACTCTGAGCGTGTCCTGTACAGGACAAGTCACCCTG
AGGTTGTCATGTACAGGATAAGCCTCACTAAGGCTGTCATTACCAGGACA
AGTCACACTGACAATGTTATTATACAGGACACGTCACTCTGTGGCTGTCA
TTGACAGGACAAGTCATGCTCCACCCTGTCATGTACAGGATAAGTATCAC
TGAGGGTGTCTCCACCATGATGAGGCCGTCATGAACAGTACAATCTTTGC
TGAGTGTATCATACTCTGGACCGTTCTCCTGATTTCGCCTACGCATATTA
CCACTTTCGCATCCCTTTGTCACGCATAGTACATGTTCAATCAACATGTT
CCTTATTACGTTTTTTTCCTTTTTGCATTCTGCCCTCCCCATCTTTAACT
TCACCTCTTTCTTTTTTGCGTTTGCCCCTCTCATTCTTTTCTCCCTCCTT
GCTGTTTCCCCCTTTTTTCCAACTCTTTTTTCCGCCCCTTTCTTTCCCTT
TCTTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_n14.g1 MSMg01no087_n14.g1 CHROMAT_FILE:
MSMg01no087_n14.g1 PHD_FILE: MSMg01no087_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:07 2005
         (151 letters)



>mm_chr16_3644640_3645190
          Length = 551

 Score =  290 bits (150), Expect = 2e-83
 Identities = 150/150 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacactgagggtgtcatggataggacaagtctcactgagggtgcctgcatcacactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtgacactgagggtgtcatggataggacaagtctcactgagggtgcctgcatcacactga 291

                                                                       
Query: 61  gagtttctccatcatgctgagggtgtcatgaagaggacaaataatgctgagggtttcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagtttctccatcatgctgagggtgtcatgaagaggacaaataatgctgagggtttcatg 231

                                         
Query: 121 tacaggacatgtcactctgagcgtgtcctg 150
           ||||||||||||||||||||||||||||||
Sbjct: 230 tacaggacatgtcactctgagcgtgtcctg 201



 Score = 78.1 bits (40), Expect = 2e-19
 Identities = 61/68 (89%), Gaps = 2/68 (2%)
 Strand = Plus / Minus

                                                                       
Query: 63  gtttctccatcatgctgagggtgtcatgaagaggacaaataatgctgagggtt-tcatgt 121
           |||||||||||||||||||||||||||||| ||||||| | | ||||||| || ||||| 
Sbjct: 548 gtttctccatcatgctgagggtgtcatgaacaggacaagtcacgctgagg-ttgtcatgg 490

                   
Query: 122 acaggaca 129
           ||||||||
Sbjct: 489 acaggaca 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 151
Length of database: 551
Length adjustment: 8
Effective length of query: 143
Effective length of database: 543
Effective search space:    77649
Effective search space used:    77649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)