BAC Information

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BAC

Clone NameMSMg01-091P13
Chromosome16 (Build37)
Map Location 7,124,004 - 7,124,473
singlet/doubletsinglet
Overlap geneA2bp1
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091P13.T7 (MSMg01no091_p13.b1)MSMg01-091P13.TJ (MSMg01no091_p13.g1)
ACCAG309774AG309775
length800704
length of high quality
(start - end)
48 (142 - 189)470 (78 - 547)
definitionCHROMAT_FILE: MSMg01no091_p13.b1 PHD_FILE: MSMg01no091_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:39 2005CHROMAT_FILE: MSMg01no091_p13.g1 PHD_FILE: MSMg01no091_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATAATTTGCNNNCGCTATNCNACTCCCTATTCCCANAGGATCCGCGN
AATTCTACTGACTCCCAGCTTTTNCTACGNNAATTTAAATCCCTANNANN
NCTTCCATTTGTANAGTTACCTGANCAACNNNAAAAANNNTTCTATCTGC
AATGGCCTCCAAGGCTGTGACTATCTGTCTGGCTACCNAACAAAGGAACA
GATTACGGAGGANTTTCTTNTTNNTTTTTNNNNTNCNNANNAAAATTACC
CCNNNAAAAANNTNNTTAANNNNNNTTATNTTTTTTTNNNNNNNTTCTTC
CCCCNNNCCGCCCCCCCAGCCCGCCTTTNTNNNNNNNNCNNNNNNANNCC
CCCTNNNNNTTTTTTTCCCTCCCTCCACCTCCCTTCCCACGGGGGGGGGG
GGTGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGATNNNNNNNNNNNNAAAATATTTATTCCTCACAACCCACCCT
CCNNTTNNNNCNNTNNNNTNNTNTCCCNNNNCCTTTCNNCCCTAAACACC
CGTACGCAGAAATTTTTTNNNNNNNNNTNTNNCNTNTTCNNNNTATCATG
AACTAAGTCAGCCGGGCGGGGGCGTTNNAAATTTNAAAANNNNCNTNNNN
NNNCCCNCCNNCCTTTTTTTGCCTTTNTCCCCCCCTTTATCCTCATCTTT
ATTCCCTCTTTAAAAATTNAATTNNNNNTCCCCCCNNNCNTTTNNNNCCT
CTCCCCCTCTTTTTTCTNTCCCCCTCCCTACCTATACTTATTATATCCTG

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTTAATCTTGAAGATATAT
TTCAGTTAACCAATTAGGAGAAAAAAAACCCTCAAAGACATGGACATAGG
CCAGCATCTAGACACGTTCCAATTTCCTCACAAAGGCACAGTGACCTTCA
TCTAAGGAAGGTCCCAAAATATCACAGACATTAGTAAATGGGACCCTATC
TGAGGGGTTGGTAGAATCCAGTCATGCCAGGAACATGAAACCTATCTTTT
CTGTCTCCATCCCATGCTGGATCAGCTGGCTGCTCATTACATTATGAAAA
TGAGCATCTCACAATGAGAGAAGCCTGAATGAGCTTGACTCCACTTCTTT
CAAGCAATGTGAATGACTTTTTAGTCCCATTTAAATGTAAAGAAATATCA
TCCCCCCAAATGGGCACCATAGCTTTCTTCCTTTGTGGGTTGGCCTTTGT
AGTAAGGCTAACACTGGGCTAGCCAAGTGTTGAGTTGGTACTTAAGGTAG
AGGTATTGTCACTGTGCAATAAAGGCAGCAAGAATAGCTGAAAGTAAAAC
ATCAAAGAGCACAGGCCCACAAAATAAAAGCATGAAAAAGGCCAGGGGTG
GAACAGAGAGCTCTTACACTGGTGGTGAGTCCCCATGTGCCGTTAAGAAG
TTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_p13.g1 MSMg01no091_p13.g1 CHROMAT_FILE:
MSMg01no091_p13.g1 PHD_FILE: MSMg01no091_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:39 2005
         (470 letters)



>mm_chr16_7123804_7124673
          Length = 870

 Score =  901 bits (466), Expect = 0.0
 Identities = 469/470 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggttaatcttgaagatatatttcagttaaccaattaggagaaaaaaaaccctcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tcaggttaatcttgaagatatatttcagttaaccaattaggagaaaaaaaaccctcaaag 611

                                                                       
Query: 61  acatggacataggccagcatctagacacgttccaatttcctcacaaaggcacagtgacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acatggacataggccagcatctagacacgttccaatttcctcacaaaggcacagtgacct 551

                                                                       
Query: 121 tcatctaaggaaggtcccaaaatatcacagacattagtaaatgggaccctatctgagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcatctaaggaaggtcccaaaatatcacagacattagtaaatgggaccctatctgagggg 491

                                                                       
Query: 181 ttggtagaatccagtcatgccaggaacatgaaacctatcttttctgtctccatcccatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttggtagaatccagtcatgccaggaacatgaaacctatcttttctgtctccatcccatgc 431

                                                                       
Query: 241 tggatcagctggctgctcattacattatgaaaatgagcatctcacaatgagagaagcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggatcagctggctgctcattacattatgaaaatgagcatctcacaatgagagaagcctg 371

                                                                       
Query: 301 aatgagcttgactccacttctttcaagcaatgtgaatgactttttagtcccatttaaatg 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 370 aatgagcttgactccacttctttcaagcaatgggaatgactttttagtcccatttaaatg 311

                                                                       
Query: 361 taaagaaatatcatccccccaaatgggcaccatagctttcttcctttgtgggttggcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taaagaaatatcatccccccaaatgggcaccatagctttcttcctttgtgggttggcctt 251

                                                             
Query: 421 tgtagtaaggctaacactgggctagccaagtgttgagttggtacttaagg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgtagtaaggctaacactgggctagccaagtgttgagttggtacttaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)