Query= MSMg01no092_f02.b1 MSMg01no092_f02.b1 CHROMAT_FILE:
MSMg01no092_f02.b1 PHD_FILE: MSMg01no092_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:08 2005
(494 letters)
>mm_chr16_86657420_86658313
Length = 894
Score = 890 bits (460), Expect = 0.0
Identities = 481/488 (98%), Gaps = 2/488 (0%)
Strand = Plus / Plus
Query: 7 gaattcacagtataacaatcttgcctggtcaagaagctgttaaagaaatgttcaaagtcc 66
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacagtaaaagaatcttgcctggtcaagaagctgttaaagaaatgttcaaagtcc 266
Query: 67 ttagtcctcagacaaatgcaaatcaaaacgaccctgagattccatcttacaccaatcaga 126
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttagtcctcagagaaatgcaaatcaaaacgaccctgagattccatcttacaccaatcaga 326
Query: 127 atggctaagatcaaaaactcaattgacagcacatgcctcaaagctcctgccctgtttgaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atggctaagatcaaaaactcaattgacagcacatgcctcaaagctcctgccctgtttgaa 386
Query: 187 ttcctgccctgacttacttcaatgactgactaagatgtggaaatgtaatccaaataaacc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcctgccctgacttacttcaatgactgactaagatgtggaaatgtaatccaaataaacc 446
Query: 247 cttccttccccaagttgcttttggttattgaacttcattacagtagatgataactctgag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttccttccccaagttgcttttggttattgaacttcattacagtagatgataactctgag 506
Query: 307 acaccatctgctcttgcttttttggcaaaccttccaccagtatctcatttaaccatttcc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acaccatctgctcttgcttttttggcaaaccttccaccagtatctcatttaaccatttcc 566
Query: 367 cacacc-cttacatgcctgaaactttattctccctacagtctttctccctgctttcacta 425
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cacacctct-acatgcctgaaactttattctccctacagtctttctccctgctttcacta 625
Query: 426 atttgtattttaccgtctcctctctttgaatgtgcctttctatgggataatttccttggt 485
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 626 atttgtattttaccttctcctctctttgaatgtgcctttccatgggataatttccttggt 685
Query: 486 ttcatatg 493
||||||||
Sbjct: 686 ttcatatg 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_f02.g1 MSMg01no092_f02.g1 CHROMAT_FILE:
MSMg01no092_f02.g1 PHD_FILE: MSMg01no092_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:08 2005
(609 letters)
>mm_chr16_86720383_86721392
Length = 1010
Score = 1102 bits (570), Expect = 0.0
Identities = 600/610 (98%), Gaps = 1/610 (0%)
Strand = Plus / Minus
Query: 1 tggctaaatattgttgaggtgggtgggtgacccttcaaccagttgccctgcctattcact 60
||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 717 tggcttaatattgttgaggtgggtgggtgacccttcaaccaggggccatgcctattcact 658
Query: 61 ggatattgtctccacaggttctaactctcctttgttgtatattttggctaatgtcctcaa 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 657 ggatattgtctccacaggttctaactcccctttgttgtatattttggctaatgtcctcaa 598
Query: 121 actaatt-taaaaaaaaacttttatcatctgttaattaagcaattatgtgatataacttt 179
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 actaattaaaaaaaaaaacttttatcatctgttaattaagcaattatgtgatataacttt 538
Query: 180 taaataaaatcataatgattttcatttatggtgaataatgaacttgctataatgaagaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 taaataaaatcataatgattttcatttatggtgaataatgaacttgctataatgaagaaa 478
Query: 240 acagtaggataaaatacattgtaaaatactgtaacaaatctataaatgttaattatcagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acagtaggataaaatacattgtaaaatactgtaacaaatctataaatgttaattatcagg 418
Query: 300 cctactgctgaagtgtcatcatttggttaagaacccatagaaatctatgagaccatttcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cctactgctgaagtgtcatcatttggttaagaacccatagaaatctatgagaccatttcc 358
Query: 360 ttactgctgtttttgagcataaagttcaaatatgaagactgtgatggttaatgttagtca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttactgctgtttttgagcataaagttcaaatatgaagactgtgatggttaatgttagtca 298
Query: 420 gcaatttataagtttaaaatatacgtgaaagactagtaaaccatttatgaatggttctgt 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 297 gcaatttataagtttaaaatatacgtggaagactagtaaaccatttatgaatggttctgt 238
Query: 480 gagggtgtttctagaggtgactgacatgtgagaaagtaactgttgtagatcgatgggaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gagggtgtttctagaggtgactgacatgtgagaaagtaactgttgtagatcgatgggaca 178
Query: 540 tgggccacatcaccgtatatgttgtggtttgaatggaataaattgagaagaaaaaggaag 599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 177 tgggccacatcaccgtatatgttgtggtttgaatgaaataaattgagaagaaaaaggaag 118
Query: 600 cacaggaata 609
|||||||||
Sbjct: 117 aacaggaata 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
