BAC Information

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BAC

Clone NameMSMg01-095C03
Chromosome16 (Build37)
Map Location 60,367,197 - 60,367,684
singlet/doubletsinglet
Overlap geneEpha6
Upstream geneGabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
Downstream geneLOC100043804, EG668168, LOC668170, LOC100043524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095C03.T7 (MSMg01no095_c03.b1)MSMg01-095C03.TJ (MSMg01no095_c03.g1)
ACCAG312120AG312121
length702701
length of high quality
(start - end)
495 (46 - 540)598 (73 - 670)
definitionCHROMAT_FILE: MSMg01no095_c03.b1 PHD_FILE: MSMg01no095_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:03 2005CHROMAT_FILE: MSMg01no095_c03.g1 PHD_FILE: MSMg01no095_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTTAGCTAACTCAATTACAATTATTATTTTTGTCCACTGTATT
TTCAAAATAAATATCTAAAATGTACTAAGTATAAAACCAAACTTCCTTGT
TCTAAGGTCTCTTATACAGATTTTCTCTACACATCTTTTTTTTTTTTTTT
TTTTTTTTTTGGCTTTACACAGAAAGACACCAACACCATCTATCCGTCCG
TCACTTAATGTTTGATAGGCTCAGCATTCCAACTGAGTTGCCATGCTAAG
CTTCTTAGGAGAGGGCCCATGGGGTTTTACAATCTGGTTTCCTCTGCCTA
CTTCTCCAGTGTACCACAGCTTACAGCAACATGTCTCCATCCATTATGCC
TTGGCTTATAAATGTGTGCATGGAATAACTCTACTCTTGGGGTACTTCCT
TGCTTTACTTCATCTTGCGAGGTTCTATTTATTCTATAATATTCGATGAA
ACATTCCTGATCCAATTAGGCTGAAATTGCTCAAGTACCCCTCTATGTTC
CCTGAGCATTTTTCTCAAGTCACAATTTATAGCCTTTTAACGAATATAAC
TACTTTCTCTTTAACCAAACCTCTGAGAAAAAAATATGACATCAAGTTTT
GATGAAGTACGCCTTAATTATGAAATATGGCGTCATTTTGCTTTTTTATG
TA
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACAACAGTCAGAATGGCTAAGATCAA
AAATTCAGTTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACAC
CACTCCATTGTTGGTGGGATTGCAAGCTTGTACAAAAACTCTGGAAATCA
GTCTGGTGTTTCCTCAGAAAATTGTACATAGTACTACTGGAGGATCCTGC
AATACCTCTACTGGGCATATATCCAGAAGATGTCCCAACCGGTGAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGAGGTCCCTCAACAGAGGAATGGATTCAGAAAATGTG
GTACATTTACACAATGGACTACTACTCAGCTATTTAAAAGAATGAATTTA
TGAAATTCCTAGGCAGATGGATGGACCTAGAGGGCATCATCCTGAGTGAG
GTAACCCAATCACAAAGGAACTCACACAATATATACTCACTGATAAGTGG
ATATTAACTCAGAAACTTTGGATACCCCAAGATATAAGATACAATTTGCT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_c03.b1 MSMg01no095_c03.b1 CHROMAT_FILE:
MSMg01no095_c03.b1 PHD_FILE: MSMg01no095_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:03 2005
         (495 letters)



>mm_chr16_60366832_60367726
          Length = 895

 Score =  880 bits (455), Expect = 0.0
 Identities = 481/491 (97%), Gaps = 3/491 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacttagctaactcaattacaattattatttttgtccactgtattttcaaaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gaattctacttagctaactcaattacaattattatttttgtccactgtattttcaaaata 794

                                                                       
Query: 65  aatatctaaaatgtactaagtataaaaccaaacttccttgttctaaggtctcttatacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aatatctaaaatgtactaagtataaaaccaaacttccttgttctaaggtctcttatacag 734

                                                                       
Query: 125 attttctctacacatctttttttttttttttttttttttttggctttacacagaaagaca 184
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 attttctctacaca---ttttttttttttttttttttttttggctttacacagaaagaca 677

                                                                       
Query: 185 ccaacaccatctatccgtccgtcacttaatgtttgataggctcagcattccaactgagtt 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccaacaccatctatccatccgtcacttaatgtttgataggctcagcattccaactgagtt 617

                                                                       
Query: 245 gccatgctaagcttcttaggagagggcccatggggttttacaatctggtttcctctgcct 304
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gccatgccaagcttcttaggagagggcccatggggttttacaatctggtttcctctgcct 557

                                                                       
Query: 305 acttctccagtgtaccacagcttacagcaacatgtctccatccattatgccttggcttat 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 556 acttctccagtgtaccacagcttacagcaacatgtctccatccattatgccttgtcttat 497

                                                                       
Query: 365 aaatgtgtgcatggaataactctactcttggggtacttccttgctttacttcatcttgcg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaatgtgtgcatggaataactctactcttggggtacttccttgctttacttcatcttgcg 437

                                                                       
Query: 425 aggttctatttattctataatattcgatgaaacattcctgatccaattaggctgaaattg 484
           |||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct: 436 aggttctatttattctataatatttgatgaaatattcctgatccaactaggctgaaattg 377

                      
Query: 485 ctcaagtaccc 495
           |||||| ||||
Sbjct: 376 ctcaagcaccc 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)