BAC Information

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BAC

Clone NameMSMg01-095E21
Chromosome16 (Build37)
Map Location 25,478,212 - 25,478,504
singlet/doubletsinglet
Overlap genenone
Upstream geneLpp, A730098P11Rik, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095E21.T7 (MSMg01no095_e21.b1)MSMg01-095E21.TJ (MSMg01no095_e21.g1)
ACCAG312250AG312251
length661873
length of high quality
(start - end)
296 (53 - 348)---
definitionCHROMAT_FILE: MSMg01no095_e21.b1 PHD_FILE: MSMg01no095_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:16 2005CHROMAT_FILE: MSMg01no095_e21.g1 PHD_FILE: MSMg01no095_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGCCGCTATACGACTCCTATACGGAGAGATCCGCGGAATTCACTATGT
CCCAAAGTATACGTGGGAAGATGCTGACTTTGGGCCATAACTCAGACATA
CAACGGTAGTGCAAGTCAAGGTGGTTTAAATAGTTTTAAATATGTCATTT
GTCCATGAGCACTTTAAGGCTGGGTGAGGACCTGAAATATTCATGTTTGC
ATTTCTGCAGTGGCAGGAGCAGCTGACATTGTCAACTGTAACTTTTCTCC
TGAAGGCTTGTTTTAACACTGTCTCCTACAGGGCGTGACATTCAAGTTCT
CATTATGAAAACAAATAATAAATTGTAAAATCATAATAGGCTCACTCCAT
CTTACGCCCTTTGGCAGTCCCCATCTATGCAGCCTTTGCCATTGTGTCTA
GCCACAATTCCCAGAGAACTATTTAGTAAGCTAATAATTCATACTGAGGG
CATAGGAATACACAGTTAATCAGTATGCCTCTCGAGGAGAGCAGCTGAGC
CTCTAAACAGTTTCTCCTGTGCTTAGTTAATTGGTAGATAGCACAAATCT
TTAAGATCTGGAATCTAATACCCAGGTTTAAATTCTATTTCTACTACTTC
CTTTGTCTGAGACCTTGACAATCCTTTAAATTACCTGCATCTTAATTTTC
CCATACTTAAT
TTTTTTTTTTTTTNTTTTNTTTCCTTTTTCTTTTNTTTTTTTNNNCCCTA
CTCNNCAACTTTTACTTTTTAGANNTCTTTAAGGAANNNTTTCTCCTCTA
AAGAGAGNNNGGGNNTTCCCCTTTCTTAAAAAGAGGGAAGGGGNNNNNNN
NCNNCCNNNTCNNNNNNNTTTTTTTCCTCTAAAAAAGAGGGGGTNNNNNN
NNNNNNNNNNNNTNNNTGTTTTGTGTGGGGGAGGGGGGGGNNGGTTTTTT
TTTTTTTTTCCCCCCNAAAAAAAAAAAGAGGGGGGGGGTNNTAANANAAT
AAAAAAAAATATTTTTTAGTTTTATTTTTATTTATATTTTTATTTTTTAT
CTTTACATCTTCGTTCCTTATCAGGCAGATTTTTTTTTTTTTTCAAAAAC
GATATTAAATAGACACCACGAAGATTTTTTTTTTTTTTCCCCCCCCCCCC
CCCGGTGTGTATTATTTTTTGTTTCATTTTATTTTTTTTCCCAAATAAAA
AAAAAAAAAAATATTTTTTGTGGGGGGGGGGGTTTTGTTTTTTTTTTTTT
TTCTTTTCTTTTTTTTTTTTTCCTCTTTTCACTCATTTTTTTTATTTTTT
ATATTATTTTTTTCCCCCTCTTTTTTTCTTTTCCCCTCCCTTGTTATTTT
ATTTTTTTTTCTGCTTTACCTCCCCCTCTGTTTTGTTTTTTATTTTTTTC
TGTTACCTTATTTTACCTTTTATTTCTTCCTGCCATATTATATATTCTCT
TTTCTTCCTCTCTCTTCTATTTTATTTTCTTTATTATTTTTTCTTTTTTT
TTTTCTTTTTTTTTCTGGTTTTTCAGATTTCATTTTTGTCTTGCCCATAT
TATTCTATTTTTTATTTCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_e21.b1 MSMg01no095_e21.b1 CHROMAT_FILE:
MSMg01no095_e21.b1 PHD_FILE: MSMg01no095_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:16 2005
         (296 letters)



>mm_chr16_25478012_25478704
          Length = 693

 Score =  501 bits (259), Expect = e-146
 Identities = 286/297 (96%), Gaps = 5/297 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtatacgtgggaagatgctgactttgggccataactcagacatacaacggtagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtatacgtgggaagatgctgactttgggccataactcagacatacaacggtagtgc 260

                                                                       
Query: 61  aagtcaaggtggtttaaatagttttaaatatgtcatttgtccatgagcactttaaggctg 120
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aagtcaaggtggtttaagtagttttaaataagtcatttgtccatgagcactttaaggctg 320

                                                                       
Query: 121 ggtgaggacctgaaatattcatgtt-tgcatttctgcagtggcaggagcagctgacattg 179
           |||||||||||||||||||    || ||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgaggacctgaaatatt----ttctgcatttctgcagtggcaggagcagctgacattg 376

                                                                       
Query: 180 tcaactgtaacttttctcctgaaggcttgttttaacactgtctcctacagggcgtgacat 239
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||
Sbjct: 377 tcaactgtaacttttctcctgaaggtttgttttaacactgtctcccacagtacgtgacat 436

                                                                    
Query: 240 tcaagttctcattatgaaaacaaataataaattgtaaaatcataataggctcactcc 296
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tcaagttctcattatgaaaacaaataataaattgtaaaatcataataggctcactcc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 693
Length adjustment: 9
Effective length of query: 287
Effective length of database: 684
Effective search space:   196308
Effective search space used:   196308
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)