BAC Information

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BAC

Clone NameMSMg01-095I03
Chromosome16 (Build37)
Map Location 70,864,223 - 70,864,780
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664930, Gbe1, D16Ertd519e
Downstream geneLOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I03.T7 (MSMg01no095_i03.b1)MSMg01-095I03.TJ (MSMg01no095_i03.g1)
ACCAG312404AG312405
length701699
length of high quality
(start - end)
551 (43 - 593)558 (73 - 630)
definitionCHROMAT_FILE: MSMg01no095_i03.b1 PHD_FILE: MSMg01no095_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:33 2005CHROMAT_FILE: MSMg01no095_i03.g1 PHD_FILE: MSMg01no095_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTACCTCTGTAACCCATTTTTAATAGGTTTTATTAAAAAACTG
GAGTCTTACTTCTTGAGTTCTTTGTATATATTGGATTTTAGCCCTCTATA
GGATGTAATCTGCTAGTTGCTGTTTTGTCCAGAAGATGCTCCAATATGTA
ATTAGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGTAAATAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAA
AATGTGGTACATTTACACAATGAAGTACTACTCAGCTATTAAAAACAATT
TCATAAAATTCTTAGACAAATGGATGGAACTGAAAATTTCATCCTGAGTA
AGGTAACCCAGTTACAAAACAACACAAAAGGTATGCACTCACTGATAAGT
GGATATTAGCCCAGAAGCTAGGAATACCCAAGATACAATTCACAGACCAC
ATGAAGCTCAAGAAGAAGGTAGACTAAAATGTGGATACTTCAGTCCTTCT
TAGAAGGGGAAACAAAATACCCATGGAAGGAGTTATAAAGTGTGGAGCAG
AGACTTGAAGAAAAGGCCATCCAGAGATTGCCCCACTCTTGCGCGCCCGA
CTCGCCAGCAAGAACAAAGCTGCAACAGGATCCTTCGGCACATGTTTATT
G
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTCCTGACTTCCATTGGTGATGAACA
GCATTGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCAAATTTGCTTC
TTGGTCTTGATGTTTTGTGCAGGGATACAAACCCTGACTAAGGCAGAAGC
TAATAAATTAAATACAAAACACACAGTTCTGGAAGGTTATAGATGTATGA
TTGAAGTAAATTTAATAAATGAAGTGACTGTCCATTTAGGACTTGAACTA
GTTAGTGTTTACTACCTGTCTGCACTGTGGTGCCTGGTACTCCCCATATC
CTCAGAACGAGGTGCACAGGGCGAATAACTAACCTTAACTTGATAGAAAG
AAAATAACAGAATTTGATGTAGAGAGAAAGGCATCCTGAGATTGAAAGCC
ACCACAGTTTAAGACTCCCCTTCTTTTCTGAAGTAAAATGTACTTCCAGA
TTGTAGCAGGACACAAATCATCCCACCTGCCACCTGCCTAACAACCGAGG
CACTGTCAAGTGTCTGAGGTCTCTCTGATACAACTGGAAGTTGCCCACAA
TCACTTGTATAAGCAGAAATTCCTTTCCTTCAGCCATTCACTGTATTCTT
CTAGTAAGTGAAAAATGCTACCATGTAAGTGACCTTGTCTCACCGCGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i03.g1 MSMg01no095_i03.g1 CHROMAT_FILE:
MSMg01no095_i03.g1 PHD_FILE: MSMg01no095_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:33 2005
         (558 letters)



>mm_chr16_70863900_70864857
          Length = 958

 Score = 1002 bits (518), Expect = 0.0
 Identities = 548/558 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcctgacttccattggtgatgaacagcattgtggaagtgtaagctgaataaaccctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ctgtcctgacttccattggtgatgaacagcattgtggaagtgtaagctgaataaaccctt 822

                                                                       
Query: 61  tcctcccaaatttgcttcttggtcttgatgttttgtgcagggatacaaaccctgactaag 120
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 821 tccccccaaatttgcttcttggtcttgatgttttgtgcagggatacaaaccctgactatg 762

                                                                       
Query: 121 gcagaagctaataaattaaatacaaaacacacagttctggaaggttatagatgtatgatt 180
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 761 gcagaagctaataaatcaaatacaaaatacacagttctggaaggttatagatgtatgatt 702

                                                                       
Query: 181 gaagtaaatttaataaatgaagtgactgtccatttaggacttgaactagttagtgtttac 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaagcaaatttaataaatgaagtgactgtccatttaggacttgaactagttagtgtttac 642

                                                                       
Query: 241 tacctgtctgcactgtggtgcctggtactccccatatcctcagaacgaggtgcacagggc 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 641 tacctgtctgcactgtggtgcctggtactctccatatcctcagaacgaggtgcacagggt 582

                                                                       
Query: 301 gaataactaaccttaacttgatagaaagaaaataacagaatttgatgtagagagaaaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 581 gaataactaaccttaacttgatagaaagaaaataacagaatttgaagtagagacaaaggc 522

                                                                       
Query: 361 atcctgagattgaaagccaccacagtttaagactccccttcttttctgaagtaaaatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcctgagattgaaagccaccacagtttaagactccccttcttttctgaagtaaaatgta 462

                                                                       
Query: 421 cttccagattgtagcaggacacaaatcatcccacctgccacctgcctaacaaccgaggca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cttccagattgtagcaggacacaaatcatcccacctgccacctgcctaacaaccgaggca 402

                                                                       
Query: 481 ctgtcaagtgtctgaggtctctctgatacaactggaagttgcccacaatcacttgtataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctgtcaagtgtctgaggtctctctgatacaactggaagttgcccacaatcacttgtataa 342

                             
Query: 541 gcagaaattcctttcctt 558
           |||||| |||||||||||
Sbjct: 341 gcagaagttcctttcctt 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)