BAC Information

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BAC

Clone NameMSMg01-095P19
Chromosome16 (Build37)
Map Location 81,147,264 - 81,147,497
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621365, LOC100039724
Downstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095P19.T7 (MSMg01no095_p19.b1)MSMg01-095P19.TJ (MSMg01no095_p19.g1)
ACCAG312771AG312772
length7501,025
length of high quality
(start - end)
234 (184 - 417)---
definitionCHROMAT_FILE: MSMg01no095_p19.b1 PHD_FILE: MSMg01no095_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:10 2005CHROMAT_FILE: MSMg01no095_p19.g1 PHD_FILE: MSMg01no095_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNCCGTCTA
ACNNNCCTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTGTGTGACTAGAATCCTAAAACTAAGAGCTTAAG
TAGTGTTTTTAACTTAAAGTGGAATGTTTATCCTTTAAGTTTAACAGTTA
TACATTTAGCCTTTTATGTTGGAAGGAGTTTTATTATGGTGATTTAGTTC
ACCTTTTTTCATATATCTAGAGCTGTAACTCACTCCTGACGTGTAACACC
TAAAAATCACTTTCTGAAGATATTTGTTCTGGTTGCAGTTCTTCCAGTGA
ATAGAAGAAATCAGTCTTGAAGCACTATGTGCTGCTGAATCTTCTGAAGT
GCACATTATTTCACATTCTGTTTTTTATCCCCACCGCCGCCACCACTCTT
CAAACTAATAACAGAGAGCCTCCTGACGTGCAAAAATAATCAGACCTCCT
CTGCATTTCGTATAGACCCCTCTATTTCATGAGTGGAATTTCTCCATTCT
AGGCTCCTATGCCATAGCTGGTGATTTAATTTCTAGTTGCAAATATTATC
TTACCTGGTATGATTGTTTCCTTCATCTAGCCTTATCAGAGCAAGAATTC
ACAATTAAGCGTGCTTAGTCAGACTTATTGATGACAAGGCACTCCGTAGC
CCTATTGCAATTTATGGTGTGTACAAGCTGACAAAGTTTCCTCATCCTTA

TTTTTTTTAATTTTTATTTATATCTCTACTACCTCTCCCCCTCTCTCCCT
CGCCCCCTNNGGGGGCGGGGGGGGGGGGGCGGCTGCCCAAAAGAAGGTTT
CCCTCCCCAGAAAGGGCCCTCCGCCCGGGCCCGCCCCCCAAAAAAAAAAG
AAGAGGGGGCTCCTTCTTGTCCTTCCGCACCCCCTTTTTCTCTCCCAAAG
GGGGGGGGGNGNNNNGNGGGCCGGTGTGGGGGTGGGGGGGGGGGGGGGGG
GGGGGGGGAGGGGANNAGGTGTTTTTTTTTTTTTTTTCCCCCCCGCCCCA
AAAAAGAAAGAAAAGAACNGGGCNTNCCNNNCCTCCTNNCCCCTCTCGCG
GGGGTGCTGGCGCGGGGGGGGCGCGGTCGCGGTGGGGGGCGGGTTCCCGC
GGGCGCGCGCGGCCGCGGGCCGCCGCGGCCCGCCCGTTCGTCCGCCCGCC
GCGGCGCGGCTGCCCGCCACCCGCCCGGCCAAACTGTTTTTTCTGGTTTT
GCCCCCCCCCCCCCCCGCGGGGGGGGGTGTGGGTCATTTCGAAAACACTT
TTNTCTCTCCCCCCGCCCCTCCCCTCGAAAAAAACAAAATAACAATTTCG
GGGGCCCCCGCCTTTCGCGGGCCCCCCCCCCCCCCCCCCCGCTCCCCGGC
GGGGGGGGTGGCCCCGCGGGGGGCCCGTCCGCGGGCGCGCCCGCCGTTGG
CCCGGCCGGTGCTCCGCGCCCCCTCCACTGGTCGGGCCGTCCCCGTCCGG
CCGGCGCCGCCGTCGGGTGGCGTCGGCGCCGGCCCCCGCCCGCCGCGCGC
CCGGCCGCGTTTCGTATTGTCGCGGGTCGCGCCCGCCTGCGTGCGCTCTG
TCTTTCGCTACGCCCCCCTCTTTACGGAGATCGGCCGGCCCGGGGCGGGT
GGGGGGCGTCCGATGTGCGCATGTGTACTGTTCTGCGCTCGTTCAGGTTC
TCCTTCTCTCTCCCGCCTCTCCTGCGCTCCGACCGTCTTGGCGCCGCGCG
CCGGCCGCCATCTTGTGCCGCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_p19.b1 MSMg01no095_p19.b1 CHROMAT_FILE:
MSMg01no095_p19.b1 PHD_FILE: MSMg01no095_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:10 2005
         (234 letters)



>mm_chr16_81147064_81147697
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaagtttaacagttatacatttagccttttatgttggaaggagttttattatggtgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 434 tttaagtttaacagttatacatttagccttttatgttggaaggagttttattatggcgat 375

                                                                       
Query: 61  ttagttcaccttttttcatatatctagagctgtaactcactcctgacgtgtaacacctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttagttcaccttttttcatatatctagagctgtaactcactcctgacgtgtaacacctaa 315

                                                                       
Query: 121 aaatcactttctgaagatatttgttctggttgcagttcttccagtgaatagaagaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaatcactttctgaagatatttgttctggttgcagttcttccagtgaatagaagaaatca 255

                                                                 
Query: 181 gtcttgaagcactatgtgctgctgaatcttctgaagtgcacattatttcacatt 234
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 254 gtcttgaagcactatgtgctgccgaatcttctgaagtgcacattatttcacatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)