Query= MSMg01no097_b14.b1 MSMg01no097_b14.b1 CHROMAT_FILE:
MSMg01no097_b14.b1 PHD_FILE: MSMg01no097_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:43 2005
(290 letters)
>mm_chr16_76836617_76837306
Length = 690
Score = 462 bits (239), Expect = e-135
Identities = 275/289 (95%), Gaps = 8/289 (2%)
Strand = Plus / Plus
Query: 3 caac-agttattttccttctggtttctgggatcccactctctcctccttgcagcctcgtg 61
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 203 caacaagttattttccttctggtttctgggatcccactctctcctccttgcagcctcatg 262
Query: 62 ttttcggtactggaccattctcctagcatcttacctgaaggttgatctttacgttcgttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 263 ttttcggtactggaccattctcctagcatcttacctgaaggttgatctttacgttcg--t 320
Query: 122 ttttaaccactgacctcagttgtccccaatgtgttttaagtttcctttactagcatatta 181
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ttttaaccactgacctcagtcgtccccaatgtgttttaagtttcctttactagcatatca 380
Query: 182 aattatcacgaatgttaagcaatgcaa-ttttttttttgagttctaggtatcagatcaaa 240
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aattatcacaaatgttaagcaatgcaatttttttttttgagttctaggtatcagatcaaa 440
Query: 241 cataaggtgtcctg--ttcttagcttcctctggtcatatgacttcctcc 287
|||||||||| ||| || ||||||||| |||||||||||||||||||
Sbjct: 441 cataaggtgttctggctt--tagcttcctgtggtcatatgacttcctcc 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no097_b14.g1 MSMg01no097_b14.g1 CHROMAT_FILE:
MSMg01no097_b14.g1 PHD_FILE: MSMg01no097_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:43 2005
(444 letters)
>mm_chr16_76926250_76927093
Length = 844
Score = 808 bits (418), Expect = 0.0
Identities = 436/444 (98%), Gaps = 4/444 (0%)
Strand = Plus / Minus
Query: 1 acgttactgaaaattaagattgaaaaatactttcccccaagcacttatatttctaaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acgttactgaaaattaagattgaaaaatactttcccccaagcacttatatttctaaagac 496
Query: 61 aacaactcgttgatgcatgttatctagattttcttccttttagatttaacaaagttgtgg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aacaactcgttgatgcctgttatctagattttcttccttttagatttaacaaagttgtgg 436
Query: 121 gcaaattaataaaatatctctaggtttattcagaaattactcctaagatgaaaacataaa 180
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 gcatattaataaaatatctctaggtttattcagaaattactcctaagacgaaaacataaa 376
Query: 181 gatttttttttttttttgccagtcagtctcgtactttattgtcgttttcatctcaggcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gatttttttttttttttgccagtcagtctcgtactttattgtcgttttcatctcaggcct 316
Query: 241 tgactgcttctcagtcccgagccttaatcttggccatttcggcgttgttcatggctgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgactgcttctcagtcccgagccttaatcttggccatttcggcgttgttcatggctgaag 256
Query: 301 ccacctggttcaagagaaagaggaaagggcggagcctacttcctcaactcaagaaagaat 360
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 255 ccacctggttcaagagaaagaggaaagggcggagcctacttcctcaactc----aagaat 200
Query: 361 tttaagaatgactctttttagggcgaagagaatgttgtaacatttgactgtgggtgtggc 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 199 tttaagaatgactctttttagggtgaagagaatgttgtaacatttgactgtgggtgtggc 140
Query: 421 tacaccaacattgtgaatttacta 444
||||||||||||||||||||||||
Sbjct: 139 tacaccaacattgtgaatttacta 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
