BAC Information

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BAC

Clone NameMSMg01-097E14
Chromosome16 (Build37)
Map Location 59,460,636 - 59,461,075
singlet/doubletsinglet
Overlap geneGabrr3
Upstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, LOC100043803
Downstream geneMina, BC043118, LOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097E14.T7 (MSMg01no097_e14.b1)MSMg01-097E14.TJ (MSMg01no097_e14.g1)
ACCAG313755AG313756
length671678
length of high quality
(start - end)
290 (42 - 331)440 (53 - 492)
definitionCHROMAT_FILE: MSMg01no097_e14.b1 PHD_FILE: MSMg01no097_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:58 2005CHROMAT_FILE: MSMg01no097_e14.g1 PHD_FILE: MSMg01no097_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTCGGAGAGATCCGCGGATTCTTTGTTCCCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTGCTGAAGTCCACCTTCTTGACCCTCTTTA
TATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCT
TTCCCAAATTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCT
TGCAGAAGCTTTGCAACTTTATGAGGTCCCATTTATCGATTCTCGATCTT
AGAGCACAAGCCACTGCTGCTCTATTCAGGAATTTATGCCCTGTACCCAT
ATTTTCGAGGTTTTTCCATACTTTTTCCTCTATATGTTTCACCGTCCCGC
TGTTATGTGGAGTTCTTTAATCCACTTAGATTTGACCTTAGTACAAGGAG
ATAGGAATGGACCAATTTGCATTCTTCTACACGATAACTGCCAGTTGTGC
TAGCACCATTTGTTGAAAATGCTGCCTTTTTTCCACTAGATGGTTTTAGC
TCCCTTGTTAAAGATCACGTGACCATAGGTGTGTGGATTCATTCCTGGGT
CTTCAATTCTATTCCCTTGGTCTACTTGCCTGTCGCTATACGAGTACCGA
GCCGTTTTTTATCACAACTGTTCTGTATTACAGCTTTTACGTCCGTCATG
GTGATTCCACCAGATGCTCCC
GGCGCCGCCTGGTCCGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTGGTTTTGCTTCTGGCACCTGACTTAAAAATAATTTAAATAAGAAGCA
GAAAACATTGTCTTAGGGAGCCTGATTTATAAGGTGGTTTATATTTAATT
CCATGAGTTATTTAGGCATCATACAATTAAATGTTAAACGAATATAATAT
CAATAATTTCTAATCTAGTCCTGAACTGATAAACAGTAGTCCCAGATTCT
TGCGCTCCTCTTTGTTCTGAGTAACCTGAAGAGCTTACCATGGCCTTAGG
AGCCATGAGTGAGTACGAATTATCAGATCATCAACATAGGCTTCTTGGAT
TTGCTTTCCAACTTATTTTTTCTCTGTAGAGAGAACATGATGATGCGCAG
ACCTATGTCTTTTGTTTTAGTTTTTGCTCTCAAACCAGAGTAAGAGTCAC
TTTCTACTTCCACTTGACTTGGGGAAGAAAGGGTTTTATTTGTTCTTTTA
AAGCAAAACTAACCAAGTCTTCCTATTGTTGCCAACAACAATCAACCCCC
TCTAAAACTAGAAAACTAACTATCTTCCCAACAAACATCCCGCTTCTAAT
GATGCTAAAAAAGCCAGATTAACTACCAAAAAACTGGCTTATTTTTCTGA
ACAGGTAAATTAATTAACGATTTTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_e14.g1 MSMg01no097_e14.g1 CHROMAT_FILE:
MSMg01no097_e14.g1 PHD_FILE: MSMg01no097_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:58 2005
         (440 letters)



>mm_chr16_59460436_59461275
          Length = 840

 Score =  843 bits (436), Expect = 0.0
 Identities = 439/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttttgcttctggcacctgacttaaaaataatttaaataagaagcagaaaacattgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tggttttgcttctggcacctgacttaaaaataatttaaataagaagcagaaaacattgtc 581

                                                                       
Query: 61  ttagggagcctgatttataaggtggtttatatttaattccatgagttatttaggcatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttagggagcctgatttataaggtggtttatatttaattccatgagttatttaggcatcat 521

                                                                       
Query: 121 acaattaaatgttaaacgaatataatatcaataatttctaatctagtcctgaactgataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acaattaaatgttaaacgaatataatatcaataatttctaatctagtcctgaactgataa 461

                                                                       
Query: 181 acagtagtcccagattcttgcgctcctctttgttctgagtaacctgaagagcttaccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acagtagtcccagattcttgcgctcctctttgttctgagtaacctgaagagcttaccatg 401

                                                                       
Query: 241 gccttaggagccatgagtgagtacgaattatcagatcatcaacataggcttcttggattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gccttaggagccatgagtgagtacgaattatcagatcatcaacataggcttcttggattt 341

                                                                       
Query: 301 gctttccaacttattttttctctgtagagagaacatgatgatgcgcagacctatgtcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gctttccaacttattttttctctgtagagagaacatgatgatgcgcagacctatgtcttt 281

                                                                       
Query: 361 tgttttagtttttgctctcaaaccagagtaagagtcactttctacttccacttgacttgg 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgttttagtttttggtctcaaaccagagtaagagtcactttctacttccacttgacttgg 221

                               
Query: 421 ggaagaaagggttttatttg 440
           ||||||||||||||||||||
Sbjct: 220 ggaagaaagggttttatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)