BAC Information

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BAC

Clone NameMSMg01-097O04
Chromosome16 (Build37)
Map Location 75,107,625 - 75,107,957
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O04.T7 (MSMg01no097_o04.b1)MSMg01-097O04.TJ (MSMg01no097_o04.g1)
ACCAG314204AG314205
length690775
length of high quality
(start - end)
135 (47 - 181)333 (129 - 461)
definitionCHROMAT_FILE: MSMg01no097_o04.b1 PHD_FILE: MSMg01no097_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:47 2005CHROMAT_FILE: MSMg01no097_o04.g1 PHD_FILE: MSMg01no097_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACTAATTCTGAGCGGCGCGGAATCAACCGNCTTCTTGACTCTCCCACT
CTCCCAACTTTAGACACACAACTGGTGTGTGTGTGTGTGTGCCCGTGTGT
GTGAGAATATGTTAGTGTCTTTGTGTGTCTGTGTGCGTTGTGAATGGGTC
TATATGCATATGACATATGTGTGTGCCCTTGCATATACAGTCTTATCGAT
GATGCCAGGAGTCTCCTGCTTGGTTTGTTCTCCTCTATATATTGAGACCA
TGTCTGCTCATTGACCTATAACTATTGCTTCTGCTAGTTCTTTTTTTTAG
CTTTTTCTATGACTCTGTCTCTGACTGTATGACTTGATATCACACATGTG
CAATTTGTTTTTACACGACTCCTGCTATCCATACTCACATGCCTCGACTT
TGTTGTATAAGATCTTTACCCTATGATCCATCCTGTTTGCTCACACCTAT
TCTCACAAAATGCCCGCTATTACTATCCACTTCCCACCCCTAAATATGCC
CCTATGCTCCATCTCTATTTGTTCTTCCCGCCCTTTTGCTCCCCCCATTC
GTTCATTCCCTCTCCCCACCTTTTTAACCCGACCCTTCGATCCCTCTACA
AATTATATTCTTTATCTGTCATTTCTTACTCCCCCCTTCTCTCTTTTCCC
ACTCCCTAAATTCCCTCCTCTGTTTAACCTTTCGCCCCAC
TATAAATTCGGTTATTTTTTTCTTGTTGTGCAAACAAACCNCCCCTCCCT
TTTNTCCGATGATATGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAACTCTTCTGGTAGGATCCAG
GTGTGATAGCTGAAACTATTTAGTCAGCCTCGTTTTCAGGATGGGGATAG
GAGTATGCTATACCATTGACAGTATCTCTGAGGTTAACTGAAATAACGGA
TTAAATGTATGTAGGAAATCCCAATGGCCTGCATTGTAAGACTCCTAGGT
TCCTCTGCTCCTGAGTGTTCTTTGTGTTCTGATAACAGAAAAGATAGTAA
GGGATTAAAGTTACAGACAATTCCCTCTGATATTGGGCATTCATCGCCTA
TCCTTAAGGAACTTTTCCCAATGGTCTCCCTTGTCATCTTGATCCCAGAA
TCAGACATAGAATTAGGCTTTCGATATATATTCTCACTTATAACCCTCAG
CTTCCCTTCCCTTCTTCCTCCTTCCTACCTTCCCTCTTTCCCCTTTCTCC
ATTTCTTTACATTCTCCCCTTCCTCTTCACTGCCTCAGCTTCCCCCCTCC
CCCAAGCTTTTCTTTCCCTCACGGCCTCCCCTGCGTACTTCAGTCTTGTT
CCTCGATGGCGTAATCCTTCTTTGATCCTCTTGACCCTGTACCAGTATTT
CTGCTATCACCAATGACCCTCTGTTCTAGCTTGAACCCTTTTTTTTAGTG
CGCAAGTTCAGGGACCCTGCCCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o04.g1 MSMg01no097_o04.g1 CHROMAT_FILE:
MSMg01no097_o04.g1 PHD_FILE: MSMg01no097_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:47 2005
         (333 letters)



>mm_chr16_75107425_75108157
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactcttctggtaggatccaggtgtgatagctgaaactatttagtcagcctcgttttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taactcttctggtaggatccaggtgtgatagctgaaactatttagtcagcctcgttttca 260

                                                                       
Query: 61  ggatggggataggagtatgctataccattgacagtatctctgaggttaactgaaataacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatggggataggagtatgctataccattgacagtatctctgaggttaactgaaataacg 320

                                                                       
Query: 121 gattaaatgtatgtaggaaatcccaatggcctgcattgtaagactcctaggttcctctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattaaatgtatgtaggaaatcccaatggcctgcattgtaagactcctaggttcctctgc 380

                                                                       
Query: 181 tcctgagtgttctttgtgttctgataacagaaaagatagtaagggattaaagttacagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgagtgttctttgtgttctgataacagaaaagatagtaagggattaaagttacagac 440

                                                                       
Query: 241 aattccctctgatattgggcattcatcgcctatccttaaggaacttttcccaatggtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattccctctgatattgggcattcatcgcctatccttaaggaacttttcccaatggtctc 500

                                            
Query: 301 ccttgtcatcttgatcccagaatcagacataga 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgtcatcttgatcccagaatcagacataga 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)