BAC Information

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BAC

Clone NameMSMg01-097O16
Chromosome16 (Build37)
Map Location 47,948,693 - 47,948,908
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O16.T7 (MSMg01no097_o16.b1)MSMg01-097O16.TJ (MSMg01no097_o16.g1)
ACCAG314228AG314229
length772696
length of high quality
(start - end)
290 (121 - 410)216 (128 - 343)
definitionCHROMAT_FILE: MSMg01no097_o16.b1 PHD_FILE: MSMg01no097_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:50 2005CHROMAT_FILE: MSMg01no097_o16.g1 PHD_FILE: MSMg01no097_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAAAATTAAAAAANAAATAAAAATATAAATTTCTTAACCNCCTATAAT
TNNCTTCATAATTGCGGCGCTATACGATCCTATTTCCAAGGTCCGCGGAT
TCTTTGTTTTCCCTGAGCCCATTTTTTAATGGGGTAGTTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCC
GATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGT
CTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGT
CCCATTTATCGATTCTTGATTTTACAGCACAAACCATTGCTGTTCTATTC
AGGAATTTTCCCCCTGTATCCATATGTTCAAGCCTTTCCCCTACTTTCTC
CTCTATGATTTTCAGCGTCTCTGCCTTTATGTGGAGCTCCTTAATCCACT
TAGATTTGACCTTAGTTACAGGAGATAGAAATGGATCAATTCGCATTCTT
CTACATGACAACAACCAGCTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTTCTTCCCCTGCCATGTTTTTAGCTCCCTTGTTCAAGATTAATTGACC
ATAGGCGCGCTGGATTCCTCTTTTGGTTCTTCCACTCTTGTTCCTTGGTC
TACTTGTCCTGTCCCTATCCTTTTTTTATGAATGTTTTGAAACACATTCG
CTTTCTAACGCCCGGTTTTATGGTTTGTTCGGTCGCGCTTCCTAAAAAAT
TCCTTCTTATCCTTTTTGGGGG
GGCGGCCGCCTGGTTTCAGAATAGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGTCATGATAATTTAAAGA
CATTAAGTTGTCTGATTGCTTTTAAAAGGATAAATGAAGGGAGAGGTTAA
GTAGGTACTAGTTGAAAGTGAAACCACTTTTCTATTATCAGTACTAAACA
CACTTAATTATATCTCAATACCCACGCTAATGCTGTTCACCAAACAGAAT
TTTGGTCTCTCTTGTCCCTTACATGAGTACATTCAAATTCCAGTTTACAG
GCCACCGCGTTGTCACTAATTCTTGGTCCTGCTGATCTGCCACTATACTT
CCTGCCCCCATTGTGCTGCTAGATTCCTGCATCATACCTTTTGTCTGTAT
CCAAAGCTCACCCTAAATTTTTTATCTACACTTTCTATCTGCATAGAACA
GCCCTCCTATGATTCCACGACAGACTCTGTGTGCCATTATGAAATGTTTA
ATGAGTGTCCTAGAATTGAGCCAGCGAACCTGCGCCTTTGCCCAAAGTAT
TCACGCATATAATTGCTTAGTACTAAACGCAGGGAGCAACGAAGCCCAAC
GTCACATGTACGCATCCCCCAAGAAGGGCAAAACACCGAGTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o16.g1 MSMg01no097_o16.g1 CHROMAT_FILE:
MSMg01no097_o16.g1 PHD_FILE: MSMg01no097_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:50 2005
         (216 letters)



>mm_chr16_47948493_47949108
          Length = 616

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgagtcatgataatttaaagacattaagttgtctgattgcttttaaaaggataaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagtcatgataatttaaagacattaagttgtctgattgcttttaaaaggataaatga 260

                                                                       
Query: 61  agggagaggttaagtaggtactagttgaaagtgaaaccacttttctattatcagtactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggagaggttaagtaggtactagttgaaagtgaaaccacttttctattatcagtactaa 320

                                                                       
Query: 121 acacacttaattatatctcaatacccacgctaatgctgttcaccaaacagaattttggtc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 321 acacacttaattatatctcaatacccacgctaatgctgttcaccaaacagaataatggtc 380

                                               
Query: 181 tctcttgtcccttacatgagtacattcaaattccag 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcttgtcccttacatgagtacattcaaattccag 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)