Query= MSMg01no098_i21.b1 MSMg01no098_i21.b1 CHROMAT_FILE:
MSMg01no098_i21.b1 PHD_FILE: MSMg01no098_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:42 2005
(519 letters)
>mm_chr16_59981187_59982107
Length = 921
Score = 893 bits (462), Expect = 0.0
Identities = 504/520 (96%), Gaps = 8/520 (1%)
Strand = Plus / Plus
Query: 5 gaattctattaatg--cctatatcttacccataaaaatcaaattaaatctaacatccaaa 62
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattctattaatgttc--atatcttacccataaaaatctaattaaatctaacatccaaa 262
Query: 63 aatccctgatgtccatagaaaataagtgtcaaaagaaaaaaaaataagacaattacttga 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 263 aatccctgatgtccatagaaaataagtgtcaaaag-aaaaaaaataagacaattacttga 321
Query: 123 aggctgttctgttgaaggagtttagatgacaaaaagatacaggatattgttttat--ttt 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 322 aggctgttctgttgaaggagtttagatgacaaaaagatacaggatgttgttttattattt 381
Query: 181 tttt-aatacagtattgctttcttggtgtttgtgtacttctggttctttcatgatgaagc 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttttaaatacagtattgctttcttggtgtttgtgtacttctggttctttcatgatgaagc 441
Query: 240 aagactattctacatgaagtttccatgaattttccatgggataccttgcttaatgttgtg 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 442 aagactattctacatgaagtttccatgaattttccatgggataccttacttaatgttgtg 501
Query: 300 atcatgacagtcagcatggaatgctcagatgttggactgcagagtgatggtctcatgtag 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atcatgacagtcagcattgaatgctcagatgttggactgcagagtgatggtctcatgtag 561
Query: 360 aaagtaggcactcttcatattgcttttcagtcttgctcttcctcaaaggatctttcatta 419
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 562 aaagtaggcactcttcatattgcttttcagtcttgcttttcttcaaaggatctttcatta 621
Query: 420 atgatctcaggtagcattcaatataaaatatgtacagcggccctgaatttgatagggtta 479
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 622 atgatctcaggtagcattcaatataaactatgtacagcagccctgaatttgatagggtta 681
Query: 480 tgagaagttgtctcagcaaggatgtatgggggagtatggg 519
||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgagaagttgtctcagcaaggatgtatgggggagtatggg 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 921
Length adjustment: 10
Effective length of query: 509
Effective length of database: 911
Effective search space: 463699
Effective search space used: 463699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_i21.g1 MSMg01no098_i21.g1 CHROMAT_FILE:
MSMg01no098_i21.g1 PHD_FILE: MSMg01no098_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:42 2005
(518 letters)
>mm_chr16_60181912_60182831
Length = 920
Score = 907 bits (469), Expect = 0.0
Identities = 503/515 (97%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 3 ttcttacctcccttaatgttt--ttaatggtgattaaggaaatatttcaggagagaacct 60
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 656 ttcttacctcccttaatgtttagttaatggtgactaaggaaatatttcaggagagaacct 597
Query: 61 ggactttggagtttaagtgaactttacgaagggtgcagcagtgtgctggcatcggactat 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 596 ggactttggagtttaagtgaactttaggaagggtgcagcagtgtgctggcatcggactat 537
Query: 121 gttctgaacactatagcatccaatgcaatattactttgtaatttcctggtatgggacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gttctgaacactatagcatccaatgcaatattactttgtaatttcctggtatgggacctg 477
Query: 181 agacaacataagaaaaattgatatcaacatcatgctgataaatgatgggcaaatcagaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 476 agacaacataagaaaaattgatatcaacatcatgctgataaatgatgggcaaatcaaaat 417
Query: 241 ttataaccttttcagtcccaagttatgacattaaccattaagacattcctttgaaacagt 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttataaccaattcagtcccaagttatgacattaaccattaagacattcctttgaaacagt 357
Query: 301 accagtgagtagcaattcttaactataagaaaattattcaatcatgaattattaactccc 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 accagtgattagcaattcttaactataagaaaattattcaatcatgaattattaactccc 297
Query: 361 acactattgctacacttactattaaacactagaattactctttgttaaaataaaaagtat 420
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 296 acactattgctacacttactattaaacactagaaatattctttgttaaaataaaaagtat 237
Query: 421 agattattattttacacagagacttgatcccccaacactatcaataggacaaaatggcaa 480
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 236 agattattattatacacagagacttgatcccccaacactatcactaggacaaaatggcaa 177
Query: 481 ccaacagattgggaaaagatctttaccaatcctac 515
|||||||||||||||||||||||||||||||||||
Sbjct: 176 ccaacagattgggaaaagatctttaccaatcctac 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 920
Length adjustment: 10
Effective length of query: 508
Effective length of database: 910
Effective search space: 462280
Effective search space used: 462280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
