BAC Information

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BAC

Clone NameMSMg01-098N12
Chromosome16 (Build37)
Map Location 72,335,722 - 72,336,056
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098N12.T7 (MSMg01no098_n12.b1)MSMg01-098N12.TJ (MSMg01no098_n12.g1)
ACCAG314920AG314921
length729709
length of high quality
(start - end)
433 (39 - 471)498 (56 - 553)
definitionCHROMAT_FILE: MSMg01no098_n12.b1 PHD_FILE: MSMg01no098_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:05 2005CHROMAT_FILE: MSMg01no098_n12.g1 PHD_FILE: MSMg01no098_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
AAGACATTCATGAGAAAGATGGCTGGAACTGATGAGACATAAGTCTGAAG
GTTGACAAAGATGCACTCTTGCTAAGCAGGATGTTTTTCATAGCTTGGTG
CTATCCTTGTAACATTAGATAGCTAAACAGAATACCATTGTGTCTTGTGA
TCTGGTTATCTTTCCACCAGATCATAAACCTAAAGGCAACATAAAGCTTA
CTGGATAAAAATGTGGAACCTGAGACTAATGTAATGATCAGTTGTGACCT
TGTAAATTCTTGCTAATCCTTGTGGGGTGGAATCCTAGACTTCTGTAAAA
GAATTTAAAAAGCTTGTTTAATACTAAATCAGATATTAATTATATTATAT
TATATTATATTATATTATATTATATTATATTATATTATATTATATTATAT
TATATTATATTATATTATCCTATCTTTTTTATCTCTCTTTTTCCCCCTCC
TCTCTTCATCTTTCTCCTATTCCCTTCTATCCTATATATTTTCCTTAATA
TCACTCTCTTATCCTCATTACCTTTTCTTTCTCTCCTTTCCTCTTTTTAT
ATTTTTCCTATCTCCCTCCCCTTTTTTTTCCCCCCCCATCTCTCTTCCCC
CCCTTTTCTCACCCCCCCCATTCCTTTTATCTCCCTCCTCCTTCTTCTCC
CTCTTATTTACCCTCCAATTTCCTTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGAAGTTAGACCCCGGAGAATCAAGACCCCTATTAAAAAATGGG
GTAAAGAGCTAAGCAAAAAATTTCCAACTGAAGAATGTCAAATGATTAAG
AACACATAAAGAAATGTTCAACATCCCTAGTCTTCAGGGAAATGCAAATC
AAAACAAACTTGAGATTCCACCTCTCACCAGTCAGAAGGGCTAAAATCAA
AAACTCAGGTAACATCAGATCCTGGCAAAGATGTGGAGAAAAAGGAACAC
TCCTTTATTTCTGGTGGTTTTGTAAGCTGGTACAACTACTCTGGAAATTA
GTTTTGTGGTTCCTCAGAAAATTGCACATTTTCCTTTCTGAGGACTCAGA
TACACCACTCCTGGGCATATACCCAAAATATGCTCCAACATGTAATAAGG
TCATATGCTCTACTATATTCATAATATCCTTATTTATATTATCTAAAAGC
TGGAAAGAACCTAGATTTCCTTTAACAAAGAAATAGATACAGAAAATGTG
GTACATTTACACAATGGAGTACAACTCAGCTATTATAAACCACGAATTCA
TGAAATTCTTAGGCAAATAGATGGAACTAGAAAATATCATCCTGAGTGAG
GTAATGCAATCACAAAAGAACACACATGATATACACTTACTGATAATTGC
ATATTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_n12.b1 MSMg01no098_n12.b1 CHROMAT_FILE:
MSMg01no098_n12.b1 PHD_FILE: MSMg01no098_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:05 2005
         (433 letters)



>mm_chr16_72335357_72336189
          Length = 833

 Score =  348 bits (180), Expect = e-100
 Identities = 298/344 (86%), Gaps = 15/344 (4%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaagacattcatgagaaagatggctggaactgatgag---acataagtctgaagg 63
           ||||||||| |||| ||||| | |||| ||||| ||||||||   ||  |||||| ||||
Sbjct: 700 gaattcaaggcatttatgagcaggatgcctggagctgatgagtatac--aagtctaaagg 643

                                                                       
Query: 64  ttgacaaagatgcactcttgctaagcaggatgtttttcatagcttggtgctatccttgta 123
            ||||||||||| |||||  |||||||||||| ||||||||||||||||||||| |||||
Sbjct: 642 ctgacaaagatgaactctcactaagcaggatggttttcatagcttggtgctatcattgta 583

                                                                       
Query: 124 acattagatagctaaacagaata---ccattgtgtcttgtgatctggttatctttccacc 180
           || |||||| |||  ||||| ||   |||   || ||||||    |||||||||||||||
Sbjct: 582 acgttagatggctgcacagactacctcca---tgccttgtg----ggttatctttccacc 530

                                                                       
Query: 181 agatcataaacctaaaggcaacataaagcttactggataaaaatgtggaacctgagacta 240
           ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 529 agatcataatcctaaaggcgacacaaagcttactggataaaaatgtggaacctgagactc 470

                                                                       
Query: 241 atgtaatgatcagttgtgaccttgtaaattcttgctaatccttgtggggtggaatcctag 300
           ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 469 atgtaataatcagttgtgaccttgtaaattcttgctaacccttgtgggatggaatcctag 410

                                                       
Query: 301 acttctgtaaaagaatttaaaaagcttgtttaatactaaatcag 344
           |||||||||||||||   ||||| ||||||||||||| ||||||
Sbjct: 409 acttctgtaaaagaaaaaaaaaaacttgtttaatactgaatcag 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)